Unperturbed dimensions of poly(9-vinyladenine)

The effect of base stacking interactions on the conformation of poly(9-vinyladenine) (PVAd) was investigated by osmometry, intrinsic viscosity, and light-scattering measurements. At neutral pH, ideal solution behavior (θ conditions) for this polymer was observed at 26 and 40°C. Intrinsic viscosity measurements revealed a conformational transition on heating from 26 to 40°C, while the ultraviolet absorbance of the solution was insensitive to the change. The transition was accompanied by an inversion in sign of the entropy parameter from negative to positive and an increase in the partial specific volume. At 40°, the variation of intrinsic viscosity with molecular weight corresponded to a random coil conformation, but the characteristic ratio, r?₀²/nl² = 8.6 ± 0.2 indicated that the unperturbed dimensions were smaller than usually observed for comparable vinyl polymers. At 26°, a rare macromolecular phenomenon was found, the intrinsic viscosity–molecular weight relation and the estimated r?₀²/nl² of 6.0–6.8 suggested that the PVAd was in a very highly compacted coil conformation, approaching a semirigid sphere. It is proposed that this effect be named the introversion phenomenon. Unlike polyadenylic acid, whose unperturbed dimensions increase with decreasing temperature due to nearest-neighbor base stacking, the results reported here suggest that both nearest-neighbor and long-range intramolecular base stacking occur in PVAd. The different stereochemical arrangements of bases in PVAd and Poly A are probably responsible for the opposite behavior observed.