首页 | 本学科首页   官方微博 | 高级检索  
     检索      


Constructing Potential Energy Surface with Correlated Theory for Dipeptides Using Molecular Tailoring Approach
Authors:Subodh S Khire  Nandini Gattadahalli  Nalini D Gurav  Anmol Kumar  Shridhar R Gadre
Institution:1. RIKEN Center for Computational Science, Kobe, 650-0047 Japan;2. Department of Scientific Computing Modelling and Simulation, Savitribai Phule Pune University, Pune, 411 007 India;3. School of Pharmacy, University of Maryland, Baltimore, 20 Penn Street, HSFII, Baltimore, Maryland, 21201 U.S.A.
Abstract:We demonstrate a cost-effective alternative employing the fragment-based molecular tailoring approach (MTA) for building the potential energy surface (PES) for two dipeptides viz. alanine-alanine and alanine-proline employing correlated theory, with augmented Dunning basis sets. About 1369 geometries are generated for each test dipeptide by systematically varying the dihedral angles urn:x-wiley:14394235:media:cphc202200784:cphc202200784-math-0001 and urn:x-wiley:14394235:media:cphc202200784:cphc202200784-math-0002 . These conformational geometries are partially optimized by relaxing all the other Z-matrix parameters, fixing the values of urn:x-wiley:14394235:media:cphc202200784:cphc202200784-math-0003 and urn:x-wiley:14394235:media:cphc202200784:cphc202200784-math-0004 . The MP2 level PES is constructed from the MTA-energies of chemically intact geometries using minimal hardware. The fidelity of MP2/aug-cc-pVDZ level PES is brought out by comparing it with its full calculation counterpart. Further, we bring out the power of the method by reporting the MTA-based CCSD/aug-cc-pVDZ level PES for these two dipeptides containing 498 and 562 basis functions respectively.
Keywords:dipeptides  fragmentation method  molecular tailoring approach  potential energy surfaces  Ramachandran plots
设为首页 | 免责声明 | 关于勤云 | 加入收藏

Copyright©北京勤云科技发展有限公司  京ICP备09084417号