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Identifying phylogenetic trees
Authors:Magnus Bordewich  Katharina T Huber  Charles Semple  
Institution:

aSchool of Computing, University of Leeds, Leeds LS2 9JT, UK

bSchool of Computing Sciences, University of East Anglia, Norwich, NR4 7TJ, UK

cDepartment of Mathematics and Statistics, University of Canterbury, Christchurch, New Zealand

Abstract:A central problem that arises in evolutionary biology is that of displaying partitions of subsets of a finite set X on a tree whose vertices are partially labelled with the elements of X. Such a tree is called an X-tree and, for a collection View the MathML source of partitions of subsets of X, characterisations for the existence and uniqueness of an X-tree that displays View the MathML source have been previously given in terms of chordal graphs. In this paper, we obtain two closely related characterisations also in terms of chordal graphs. The first describes when View the MathML source identifies an X-tree, and the second describes when a compatible subset of View the MathML source is of maximum size.
Keywords:Phylogenetic tree  Identifying  Restricted chordal completion
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