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Noisy Hamiltonian Monte Carlo for Doubly Intractable Distributions
Authors:Julien Stoehr  Alan Benson  Nial Friel
Affiliation:School of Mathematics and Statistics, University College Dublin and Insight Centre for Data Analytics, Dublin, Ireland
Abstract:Hamiltonian Monte Carlo (HMC) has been progressively incorporated within the statistician’s toolbox as an alternative sampling method in settings when standard Metropolis–Hastings is inefficient. HMC generates a Markov chain on an augmented state space with transitions based on a deterministic differential flow derived from Hamiltonian mechanics. In practice, the evolution of Hamiltonian systems cannot be solved analytically, requiring numerical integration schemes. Under numerical integration, the resulting approximate solution no longer preserves the measure of the target distribution, therefore an accept–reject step is used to correct the bias. For doubly intractable distributions—such as posterior distributions based on Gibbs random fields—HMC suffers from some computational difficulties: computation of gradients in the differential flow and computation of the accept–reject proposals poses difficulty. In this article, we study the behavior of HMC when these quantities are replaced by Monte Carlo estimates. Supplemental codes for implementing methods used in the article are available online.
Keywords:Bayesian inference  Hamiltonian Monte Carlo  Intractable likelihood  Markov chain Monte Carlo  Markov random fields
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