A hybrid genetic algorithm for the repetition free longest common subsequence problem

Computing the longest common subsequence of two sequences is one of the most studied algorithmic problems. In this work we focus on a particular variant of the problem, called repetition free longest common subsequence (RF-LCS$\text{<small-caps>RF-LCS</small-caps>}$), which has been proved to be NP-hard. We propose a hybrid genetic algorithm, which combines standard genetic algorithms and estimation of distribution algorithms, to solve this problem. An experimental comparison with some well-known approximation algorithms shows the suitability of the proposed technique.