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An isothermal strand displacement amplification strategy for nucleic acids using junction forming probes and colorimetric detection
Authors:Xuchu Wang  Weiwei Liu  Binbin Yin  Yiwen Sang  Zhenping Liu  Yu Dai  Xiuzhi Duan  Gong Zhang  Shijia Ding  Zhihua Tao
Institution:1.Department of Laboratory Medicine,the Second Affiliated Hospital of Zhejiang University School of Medicine,Hangzhou,China;2.Key Laboratory of Clinical Laboratory Diagnostics (Ministry of Education), College of Laboratory Medicine,Chongqing Medical University,Chongqing,China
Abstract:The authors describe a method for DNA target recognition and signal amplification that is based on the target-induced formation of a three way junction. The subsequent assembly of two DNA probes releases the inhibitory strand and triggers a downstream strand displacement amplification. This causes the formation of a G-rich single sequence that binds to a hemin monomer with its peroxidase-mimicking properties. The resulting peroxidase (POx) activity is quantified by using H2O2 and TMB as the substrate. In the presence of an inhibitor, in contrast, the POx-like activity is strongly reduced. This forms the basis for a highly sensitive DNA assay. It has a 0.8 pM detection limit when operated at a wavelength of 450 nm and was applied to the isothermal determination of target DNA with high selectivity.
Graphical abstract Schematic of the assay: Introduction of target results in the formation of a three way junction. The subsequent assembly of two probes releases the inhibitory strand and triggers a downstream strand displacement amplification, generating amount of G-rich single sequence which causes peroxidase-mimicking activity on binding to a hemin monomer.
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