Molecular Modeling of Steroid–Nucleoside Conjugates: A Preliminary Structural Study

In recent years, molecular modeling has been used to predict structure and chemical behavior of molecules in order to design drugs and enhance the performance of pharmaceuticals. The size and complexity of molecules studied computationally has grown as the computational power available has increased, along with the creation and formulation of new theories and methods. We will apply these methods to a unique set of steroid-nucleoside conjugates in order to interpret their differences in activity. In the set of four studied in this work (three acids bonded to AZT through an ester bond and an additional isomer of the second in the series), only the cholenic acid-conjugated species (Conjugate 1) has exhibited antitumor behavior, while the other two, P-16-acid and P-21-oic acid (prednisolone with an ester linkage to zidovudine, AZT), do not. In this study, we use molecular mechanics and semiempirical techniques to compare structures and to examine rotational barriers and solvation effects on many of the low-lying conformations of these four conjugates, as well as to use electrostatic potential isosurfaces in order to gain insight into the contributions to the activity or inactivity of these potential antitumor drugs.