GPCR A2A AR腺苷受体蛋白的激动剂结合及其诱导的蛋白活性开关构象变化

运用分子动力学模拟,研究了腺苷酸（激动剂）与A2AAR腺苷受体蛋白的相互作用和配体结合诱导的蛋白动力学变化．识别了与腺苷酸结合力强于0．5kcal／mol的关键基团：A63^2．61,I66^2．64,V84^3.32,L85^3.33,T88^3.36,F168^5.29,M177^5.38,L249^6.51,H250^6.52和N253^6.55,观察到腺苷酸没有与L167^5.28相互作用,这一结果支持了L167^5.28是抑制剂特异性结合位点,不与激动剂结合．未结合配体（激动剂或抑制剂）的单体A2AAR和腺苷酸结合后的A2AAR在构象上有三个不同功能性开关．腺苷酸结合可以诱导A2AAR腺苷受体蛋白的构象调整,使得三个功能性开关器件的构象与单体A2AAR不同．     

α‐Tetraphosphorus Trichalcogenide Diamides and Imides containing both Sulfur and Selenium

Reaction of a mixture of bicyclic phosphorus sulfide selenide iodides α‐P₄S_nSe_3−nI₂ (n = 0–3) with PrⁱNH₂ and Et₃N gave corresponding diamides α‐P₄S_nSe_3−n(NHPrⁱ)₂ (n = 0–3) and imides α‐P₄S_nSe_3−n(μ‐NPrⁱ) (n = 2–3), identified in solution by ³¹P NMR. In one isomer of α‐P₄S₂Se(μ‐NPrⁱ), the C₂ symmetry of imides such as α‐P₄S₃(μ‐NPrⁱ) was broken, allowing relative assignment of ²J NMR couplings to the PNP bridge and the PSP bridge opposite to it. The coupling through the sulfur bridge was found to be reduced to ca. zero, in contrast to previous assumptions for this class of compounds. Ab initio models were calculated at the MPW1PW91/svp level for the sulfide selenide imides and for a selection of bond rotamers of the diamides, and at the MPW1PW91/LanL2DZ(d) level for the sulfide selenide diiodides. Different skeletal isomers were prevalent for the mixed chalcogenide diamides than for the diiodides, showing that exchange of chalcogen between skeletal positions took place in the amination reaction even at room temperature. Similar differences to those observed were predicted by the models, suggesting that equilibrium was attained.     

Theoretical study of dopamine. Application of the HSAB principle to the study of drug–receptor interactions

We present a theoretical conformational study of neutral and N-protonated form of dopamine in which we relate its pharmacological activity to the chemical hardness. We have found that the neutral form presents small fluctuations in the energy and the chemical hardness with the conformational variables, whereas the N-protonated form shows significant changes in both properties. An important result is that the Principle of Maximum Hardness is satisfied. The trans coplanar rotamers are postulated as the pharmacophoric conformation(s) because these rotamers show minimal chemical hardness. In addition, we have calculated the hardness of a model of the anionic binding site of the dopamine receptor, which is formed by a formate ion and two benzenes. We have compared the hardness calculated for this model with the hardness of the isolated formate anion, and found that the hardness of the base in the binding site is lower than that of the isolated formate group. Also, it is found that the hardness of the anionic binding site model is similar to that of both trans coplanar rotamers of protonated dopamine, in agreement with the Hard and Soft Acid and Base Principle.     

H, C NMR spectral and single crystal structural studies of toxaphene congeners. Quantum chemical calculations for preferred conformers of 2,5-endo,6-exo,8,9,9,10,10-octachloro-2-bornene and their DFT/GIAO C chemical shifts

The ¹H and ¹³C NMR chemical shifts for six toxaphene congeners: 2-exo,3-endo,6-exo,8,9,10-hexachloro- (1), 2-exo,3-endo,5-exo,9,9,10,10-heptachloro- (2), 2-exo,3-endo,6-exo,8,9,10,10-heptachloro- (3), 2-exo,3-endo,5-exo,6-endo,8,9,10-heptachloro- (4), 2-exo,3-endo,5-exo,6-endo,8,9,9,10-octachlorobornane (5) and 2,5-endo,6-exo,8,9,9,10,10-octachloro-2-bornene (6) are reported. Their chemical shift assignments have been obtained by means of Pulsed Field Gradient (PFG) Double Quantum Filtered (DQF) ¹H,¹H correlation spectroscopy (COSY), PFG ¹H,¹³C Heteronuclear Multiple Quantum Coherence (HMQC) and PFG ¹H,¹³C Heteronuclear Multiple Bond Correlation (HMBC) experiments. A single crystal X-ray structural analysis was made for compounds 1, 3, 4 and 6. The prevalences of two octachlorobornene rotamers (6a,6b) were elucidated by ab initio MO method and single point DFT/GIAO calculations for ¹³C chemical shifts. Theoretical calculations proved that the single crystal structure of 6 corresponds its most stable conformer in solution.     

Excited-state intramolecular proton transfer in 2-(2′,6′-dihydroxyphenyl)benzoxazole: effect of dual hydrogen bonding on the optical properties

2-(2′,6′-Dihydroxyphenyl)benzoxazole (DHBO) has been synthesized by using palladium-catalyzed oxidative cyclization. The compound utilizes both O-H···N and O-H···O bonds to ensure a coplanar structure between the benzoxazole and phenol fragments. Optical comparison with the parent compound 2-(2′-hydroxyphenyl)benzoxazole (HBO) reveals that the dual hydrogen bonding in DHBO plays an essential role in raising the desirable keto emission for ESIPT and tuning the polarity sensitivity toward the molecular environment. DHBO also exhibits a higher quantum yield (?_fl = 0.108 in methanol) than HBO (?_fl = 0.0025) in the same solvent.     

Heterocyclic derivatives of 2-amino-4-nitrophenol

Summary A new pathway for the synthesis of cyclic derivatives of 2-amino-4-nitrophenol by application of dibromoalkanes is described. This general method was used for the preparation of several heterocycles (partially saturated 1,4-benzoxazines, 1,5-benzoxazepines, 1,6-benzoxazocines). Two rotamers are present in solution of theN-formyl derivatives, the relative amounts depending on the solvent used.

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Heterozyklische Derivate von 2-Amino-4-nitrophenol

Zusammenfassung Eine neue Methode zur Herstellung heterozyklischer Derivate von 2-Amino-4-nitrophenol wird vorgestellt. Dieses allgemeine Verfahren kann zur Synthese von verschiedenen Ringsystemen (partielle gesättigte 1,4-Benzoxazine, 1,5-Benzoxazepine, 1,6-Benzoxazocine) benutzt werden. In den Lösungen derN-Formyl-Derivate können zwei Rotamere identifiziert werden. Ihre relative Menge hängt vom Lösungsmittel ab.

     

Side-chain conformational space analysis (SCSA): A multi conformation-based QSAR approach for modeling and prediction of protein–peptide binding affinities

In this article, the concept of multi conformation-based quantitative structure-activity relationship (MCB-QSAR) is proposed, and based upon that, we describe a new approach called the side-chain conformational space analysis (SCSA) to model and predict protein-peptide binding affinities. In SCSA, multi-conformations (rather than traditional single-conformation) have received much attention, and the statistical average information on multi-conformations of side chains is determined using self-consistent mean field theory based upon side chain rotamer library. Thereby, enthalpy contributions (including electrostatic, steric, hydrophobic interaction and hydrogen bond) and conformational entropy effects to the binding are investigated in terms of occurrence probability of residue rotamers. Then, SCSA was applied into the dataset of 419 HLA-A 0201 binding peptides, and nonbonding contributions of each position in peptide ligands are well determined. For the peptides, the hydrogen bond and electrostatic interactions of the two ends are essential to the binding specificity, van der Waals and hydrophobic interactions of all the positions ensure strong binding affinity, and the loss of conformational entropy at anchor positions partially counteracts other favorable nonbonding effects.     

Phosphorus NMR Characterisation of P–N Bond Rotamers of a α‐P4S3 Amide with a Conformationally Constrained Chiral Substituent

Reactions of bicyclic α‐P₄S₃I₂ with Hpthiq gave solutions containing α‐P₄S₃(pthiq)I and α‐P₄S₃(pthiq)₂, where Hpthiq is the conformationally constrained chiral secondary amine 1‐phenyl‐1,2,3,4‐tetrahydroisoquinoline. The expected diastereomers have been characterised by complete analysis of their ³¹P{¹H} NMR spectra. Hindered P–N bond rotation in the amide iodide α‐P₄S₃(pthiq)I caused greater broadening of peaks in the room‐temperature spectrum of one diastereomer than in that of the other. At 183 K, spectra of two P–N bond rotamers for each diastereomer were observed and analysed. The minor rotamers showed strong evidence for steric crowding, having large diastereomeric differences in ¹J(P–P) and ²J(P–S–P) couplings (49 Hz, 16 % of value, and 4.4 Hz, 19 % of value, respectively).     

间甲基苯甲醚分子旋转异构体的质量分辨阈值电离光谱

间甲基苯甲醚分子有顺式和反式两个转动异构体.利用单光共振双光子电离技术和质量分辨阈值电离技术,研究了间甲基苯甲醚分子顺反异构体的基态到第一电子激发态(S1←S0)的跃迁和阈值电离.得到顺式、反式间甲基苯甲醚分子S1态的激发能(E1)分别为(36049±2)和(36117±2)cm-1,绝热电离能(Ip)分别为(64859±5)和(65110±5)cm-1.结合从头算法和密度泛函理论的量子化学计算,解释了顺式、反式间甲基苯甲醚分子E1和Ip存在差异的原因,并且对S1态和离子基态D0态出现的谱峰进行了标识.间甲基苯甲醚分子顺反异构体在S1态和D0态的活性振动主要是甲基转动、面内环的运动和与取代基相关的弯曲振动.间甲基苯甲醚分子的S1态振动光谱、D0态离子光谱以及理论计算均表明这两个转动异构体在D0态的几何构型与S1态的中性几何构型相比有较大改变,取代基与取代基、取代基与苯环间的相互作用强度高低次序为:S0S1D0.     

Conformational Switches: Controlling the Carbamate C-N Rotamer Equilibrium

The syn / anti rotamer ratio for tert -butyl N -(2-thiazyl)carbamate 3 was measured by solution-state NMR in the presence and absence of a donor-acceptor-donor hydrogen bonding template. The template is able to switch the conformation of carbamate 3 from >95% anti to >70% syn making it the most effective carbamate conformational switch yet reported. B3LYP calculations provide insight into the factors that produce this result.