紫色球杆菌视紫红质光谱特性的机器学习研究

近年来，机器学习等人工智能技术被应用于蛋白质工程，其在蛋白质结构、功能预测、催化活性等研究中具有独特优势。在未知蛋白质结构的情况下，将蛋白质序列和功能特性与机器学习相结合，基于序列-活性关系（innovative sequence-activity relationship，ISAR）算法，将蛋白质氨基酸序列数字化，用快速傅里叶变换（fast four transform，FFT）进行预处理，再进行偏最小二乘回归建模，可在数据集较少情况下拟合得到最佳模型。通过机器学习对紫色球杆菌视紫红质（gloeobacter violaceus rhodopsin，GR）的突变体蛋白质氨基酸序列与光谱最大吸收波长进行建模，获得了最佳模型。用最佳索引LEVM760106建模得到的确定系数R² 为0.944，均方误差E为11.64。用小波变换进行的预处理，其R² 虽也约为0.944，但E大于11.64，不及FFT进行的预处理。方法较好地解决了蛋白质序列与功能特性之间的数学建模问题，在蛋白质工程中可为预测更优的突变体提供支持。     

A modified SPH method to model the coalescence of colliding non-Newtonian liquid droplets

This paper develops a modified smoothed particle hydrodynamics (SPH) method to model the coalescence of colliding non-Newtonian liquid droplets. In the present SPH, a van der Waals (vdW) equation of state is particularly used to represent the gas-to-liquid phase transition similar to that of a real fluid. To remove the unphysical behavior of the particle clustering, also known as tensile instability, an optimized particle shifting technique is implemented in the simulations. To validate the numerical method, the formation of a Newtonian vdW droplet is first tested, and it clearly demonstrates that the tensile instability can be effectively removed. The method is then extended to simulate the head-on binary collision of vdW liquid droplets. Both Newtonian and non-Newtonian fluid flows are considered. The effect of Reynolds number on the coalescence process of droplets is analyzed. It is observed that the time up to the completion of the first oscillation period does not always increase as the Reynolds number increases. Results for the off-center binary collision of non-Newtonian vdW liquid droplets are lastly presented. All the results enrich the simulations of the droplet dynamics and deepen understandings of flow physics. Also, the present SPH is able to model the coalescence of colliding non-Newtonian liquid droplets without tensile instability.     

Highly Specific,Single-step Cancer Cell Isolation with Multi-Aptamer-Mediated Proximity Ligation on Live Cell Membranes

A single-step method for isolation of specific cells based on multiple surface markers will have unique advantages because of its scalability, efficacy, and mildness. Herein, we developed multi-aptamer-mediated proximity ligation method on live cell membranes that leverages a multi-receptor co-recognition design for enhanced specificity, as well as a robust in situ signal amplification design for improved sensitivity of cell isolation. We demonstrated the promising efficacy of our method on differentiating tumor cell subtypes in both cell mixtures and clinical samples. Owing to its simple and fast operation with excellent cell isolation sensitivity and accuracy, this approach will have broad applications in biological science, biomedical engineering, and personalized medicine.     

Synergistic therapeutic effects of Duzhong Jiangya Tablets and amlodipine besylate combination in spontaneously hypertensive rats using 1H-NMR- and MS-based metabolomics

Duzhong Jiangya Tablet (DJT) composed of Eucommia ulmoides Oliv. and several other traditional Chinese medicines is a Chinese herbal compound, which is clinically used to treat hypertension. The aim of this study was to evaluate the antihypertensive effect of DJT and amlodipine besylate (AB) on the synergistic treatment of spontaneously hypertensive rats (SHRs), and to explore its antihypertensive mechanism. The synergistic therapeutic effect of DJT in combination with AB on SHR was studied using two metabolomics methods based on mass spectrum (MS) and nuclear magnetic resonance. Metabolomics analysis of plasma, urine, liver, and kidney and the combination of orthogonal partial least squares discriminant analysis was performed to expose potential biomarkers. Then, the overall metabolic characteristics and related abnormal metabolic pathways in hypertensive rats were constructed. Blood pressure measurements showed that DJT combined with AB has better effects in treating hypertension than it being alone. A total of 30 biomarkers were identified, indicating that hypertension disrupted the balance of multiple metabolic pathways in the body, and that combined administration restored metabolite levels better than their administration alone. The changes of biomarkers revealed the synergistic therapeutic mechanism of DJT combined with AB, which provided a reference for the combination of Chinese and Western medicines.     

Novel alternating copolyoxamides with high crystallinity and heat resistance

Two series of novel alternating copolyoxamides (PAnT-alt-n2 and PAn2-alt-62) are synthesized via solution/solid-state polycondensation (SSP). The alternating structures are analyzed carefully with ¹H NMR and ¹³C NMR spectra. The melting behaviors, thermal stabilities, crystal structures and crystallinities are systematically evaluated by DSC, TGA and WAXD. The results reveal that these alternating copolyoxamides possess almost perfect alternating chain structures and have high melting temperature (T_m > 270 °C), high crystallinity (X_c > 32%) and high decomposition temperature (T₅ > 405 °C) as well as low saturated water absorption (<3.5 wt%), which suggests that they have high potential as engineering plastic of high heat resistant.     

CoO纳米颗粒/石墨烯纳米纤维复合材料的制备及电化学性能

用石墨烯和Co(CH₃COO)₂·4H₂O作为原料,利用超声辅助法合成了锂离子电池的负极材料CoO纳米颗粒/中空石墨烯纳米纤维复合物.采用X射线衍射(XRD)确定材料的物相组成,采用扫描电子显微镜(SEM)和透射电子显微镜(TEM)观察材料的表面形貌和微观结构,采用X射线光电子能谱(XPS)确定材料的价态结构.采用循环伏安、恒电流充放电和交流阻抗谱表征材料的电化学性能.结果显示,在100 mA/g的电流密度下,循环了160次后,可逆容量仍超过800 mA/g,库仑效率保持在99%以上.该材料优异的电化学性能主要归因于石墨烯的中空纤维结构,中空内部可以容纳电解液,能直接将离子输送到颗粒表面,实现了离子的快速传输;二维中空纤维搭建成三维网络结构,实现了三维电子传导网络.     

卡罗琳·露丝·贝尔托西——诺贝尔化学奖史上第八位女性得主

卡罗琳·露丝·贝尔托西因开创了生物正交化学而获得2022年诺贝尔化学奖,该反应使科学家能够在不破坏细胞正常化学功能的情况下探索细胞、跟踪生物过程并实现了多种应用,提高了人类探索生命运动的能力和医学药物治疗的发展水平。通过回顾贝尔托西的研究背景以及相关的科研历程,提出了重视自主研究能力,在实践探索中收获无限可能;关注跨学科知识生产,在交叉领域开拓学科前沿;发挥科研“她”力量,更加多元与开放包容的思考与启示。     

Inlaying Bismuth Nanoparticles on Graphene Nanosheets by Chemical Bond for Ultralong-Lifespan Aqueous Sodium Storage

Rechargeable aqueous sodium ion batteries (ASIBs) are rising as an important alternative to lithium ion batteries, owing to their safety and low cost. Metal anodes show a high theoretical capacity and nonselective hydrated ion insertion for ASIBs, yet their large volume expansion and sluggish reaction kinetics resulted in poor electrochemical stability. Herein, we demonstrate an electrode cyclability enhancement mechanism by inlaying bismuth (Bi) nanoparticles on graphene nanosheets through chemical bond, which is achieved by a unique laser induced compounding method. This anchored metal-graphene heterostructure can effectively mitigate volume variation, and accelerate the kinetic capability as the active Bi can be exposed to the electrolyte. Our method can achieve a reversible capacity of 122 mAh g⁻¹ at a large current density of 4 A g⁻¹ for over 9500 cycles. This finding offers a desirable structural design of other metal anodes for aqueous energy storage systems.     

Fused Indacene Dimers

Polycyclic hydrocarbons consisting of two or more directly fused antiaromatic subunits are rare due to their high reactivity. However, it is important to understand how the interactions between the antiaromatic subunits influence the electronic properties of the fused structure. Herein, we present the synthesis of two fused indacene dimer isomers: s-indaceno[2,1-a]-s-indacene ( s -ID ) and as-indaceno[3,2-b]-as-indacene ( as -ID ), containing two fused antiaromatic s-indacene or as-indacene units, respectively. Their structures were confirmed by X-ray crystallographic analysis. ¹H NMR/ESR measurements and DFT calculations revealed that both s -ID and as -ID have an open-shell singlet ground state. However, while localized antiaromaticity was observed in s -ID , as -ID showed weak global aromaticity. Moreover, as -ID exhibited a larger diradical character and a smaller singlet-triplet gap than s -ID . All the differences can be attributed to their distinct quinoidal substructures.