Azasugar inhibitors as pharmacological chaperones for Krabbe disease

Krabbe disease is a devastating neurodegenerative disorder characterized by rapid demyelination of nerve fibers. This disease is caused by defects in the lysosomal enzyme β-galactocerebrosidase (GALC), which hydrolyzes the terminal galactose from glycosphingolipids. These lipids are essential components of eukaryotic cell membranes: substrates of GALC include galactocerebroside, the primary lipid component of myelin, and psychosine, a cytotoxic metabolite. Mutations of GALC that cause misfolding of the protein may be responsive to pharmacological chaperone therapy (PCT), whereby small molecules are used to stabilize these mutant proteins, thus correcting trafficking defects and increasing residual catabolic activity in cells. Here we describe a new approach for the synthesis of galacto-configured azasugars and the characterization of their interaction with GALC using biophysical, biochemical and crystallographic methods. We identify that the global stabilization of GALC conferred by azasugar derivatives, measured by fluorescence-based thermal shift assays, is directly related to their binding affinity, measured by enzyme inhibition. X-ray crystal structures of these molecules bound in the GALC active site reveal which residues participate in stabilizing interactions, show how potency is achieved and illustrate the penalties of aza/iminosugar ring distortion. The structure–activity relationships described here identify the key physical properties required of pharmacological chaperones for Krabbe disease and highlight the potential of azasugars as stabilizing agents for future enzyme replacement therapies. This work lays the foundation for new drug-based treatments of Krabbe disease.     

Conjectured statistics for the q,t-Catalan numbers

We introduce the distribution function F_n(q,t) of a pair of statistics on Catalan words and conjecture F_n(q,t) equals Garsia and Haiman's q,t-Catalan sequence C_n(q,t), which they defined as a sum of rational functions. We show that F_n,s(q,t), defined as the sum of these statistics restricted to Catalan words ending in s ones, satisfies a recurrence relation. As a corollary we are able to verify that F_n(q,t)=C_n(q,t) when t=1/q. We also show the partial symmetry relation F_n(q,1)=F_n(1,q). By modifying a proof of Haiman of a q-Lagrange inversion formula based on results of Garsia and Gessel, we obtain a q-analogue of the general Lagrange inversion formula which involves Catalan words grouped according to the number of ones at the end of the word.     

A study of the formation of silica-supported mixed magnesium-manganese spinel oxides from multicomponent gels

The effects of thermal treatment on composite materials prepared by the gelation of sols comprising large concentrations of metal oxide precursor salts have been investigated, in order to determine the compositional and thermal requirements for forming spinel magnesium manganates in such systems. The preparative technique has been found to give rise to derived gel materials in which the metal oxide phase, in the form of regular spherical particles, is dispersed throughout a continuous silica matrix. Silica-supported mixed magnesium and manganese spinel oxide phases were obtained for systems comprising at least 30 wt% metal nitrate after heating to temperatures between 700 and 850°C, but not without concomitant formation of Mn₂O₃ and modification of the silica network by magnesium.     

The crystal structure of Hf3As

Hf₃As has a monoclinic unit cell of dimensions a = 15.3898(14) Å, b = 5.3795(5) Å, c = 15.330(14) Å, β = 90.291(6)°. A structure proposal based on space group $\text{C2}\text{c}$ (No. 15) has been refined by the least-squares method using a Rietveld-type fullprofile analysis of Guinier-Hägg X-ray powder film intensity data. The Hf₃As structure is an intermediate between the Fe₃P and the Ti₃P types. The atomic coordination follows rules formulated earlier for representatives of the Fe₃PTi₃PV₃S family of structures.     

Gruppenreaktionen in der organischen Analyse

Zusammenfassung Der grundsätzliche Unterschied zwischen anorganischer und organischer Analyse wird diskutiert, wobei dargelegt wird, daß die Gruppenreaktionen der funktioneilen Gruppen in der organischen Analyse die Funktionen der Ionenreaktionen der anorganischen Analyse übernommen haben.Als Beispiele werden sowohl chemische Reaktionen als auch instrumentelle Methoden zur Identifikation von Hydroxylverbindungen, Carboxylsäuren, Carbonylverbindungen, Aminen, einschließlich Aminosäuren, N-Oxiden, schwefelhaltige Verbindungen, Alkoxyverbindungen und Kohlenwasserstoffen erwähnt.Es wird betont, daß sich die endgültige Identifikation einer organischen Verbindung nur durch Konbination qualitativer und quantitativer Methoden durchführen läßt.

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Summary The fundamental difference between inorganic and organic analysis is discussed, and it is shown how group reactions in organic analysis have assumed the function of ionic reactions in inorganic analysis.Chemical reactions and instrumental methods for the identification of the following compounds are mentioned hydroxy compounds, carboxylic acids, carbonyl compounds, amines, including amino-acids, N-oxides, sulphur containing compounds, alkoxy compounds and hydrocarbons. It is emphasized that a combination of qualitative and quantitative methods is necessary for obtaining a final identification.

     

Discovery of a new phosphotyrosine mimetic for PTP1B using breakaway tethering

Protein tyrosine phosphatases play important roles in many signaling cascades involved in human disease. The identification of druglike inhibitors for these targets is a major challenge, and the discovery of suitable phosphotyrosine (pY) mimetics remains one of the key difficulties. Here we describe an extension of tethering technology, "breakaway tethering", which is ideally suited for discovering such new chemical entities. The approach involves first irreversibly modifying a protein with an extender that contains both a masked thiol and a known pY mimetic. The extender is then cleaved to release the pY mimetic, unmasking the thiol. The resulting protein is screened against a library of disulfide-containing small molecule fragments; any molecules with inherent affinity for the pY binding site will preferentially form disulfides with the extender, allowing for their identification by mass spectrometry. The ability to start from a known substrate mimimizes perturbation of protein structure and increases the opportunity to probe the active site using tethering. We applied this approach to the anti-diabetic protein PTP1B to discover a pY mimetic which belongs to a new molecular class and which binds in a novel fashion.     

Determination of zinc,cadmium, lead and copper in sea water by means of computerized potentiometric stripping analysis

Water samples from the Arctic Sea were analyzed by the potentiometric stripping technique. Lead(II) and cadmium(II) were determined after pre-electrolysis for 32 min at—1.1 V vs. Ag/AgCl, the detection limits being 0.06 and 0.04 nM, respectively. Zinc(II) was determined after the addition of gallium(III) by pre-electrolysis for 16 min at —1.4 V vs. Ag/AgCl, the detection limit being 0.25 nM. Problems in the determination of copper(II) at the very low concentrations found in oceanic waters are outlined. The average zinc(II), cadmium(II) and lead(II) concentrations in eight different samples were 2.5, 0.16 and 0.10 nM as determined by potentiometric stripping analysis and 1.9, 0.16 and 0.09 nM as determined by solvent extraction/atomic absorption spectrometry. The advantages of this computerized technique for the analysis of sea water are discussed.     

Feasibility of a liquid-phase microextraction sample clean-up and liquid chromatographic/mass spectrometric screening method for selected anabolic steroid glucuronides in biological samples

Anabolic androgenic steroids (AAS) are metabolized extensively in the human body, resulting mainly in the formation of glucuronide conjugates. Current detection methods for AAS are based on gas chromatographic/mass spectrometric (GC/MS) analysis of the hydrolyzed steroid aglycones. These analyses require laborious sample preparation steps and are therefore time consuming. Our interest was to develop a rapid and straightforward method for intact steroid glucuronides in biological samples, using liquid-phase microextraction (LPME) sample clean-up and concentration method combined with liquid chromatographic/tandem mass spectrometric (LC/MS/MS) analysis. The applicability of LPME was optimized for 13 steroid glucuronides, and compared with conventional liquid-liquid extraction (LLE) and solid-phase extraction (SPE) procedures. An LC/MS/MS method was developed for the quantitative detection of AAS glucuronides, using a deuterium-labeled steroid glucuronide as the internal standard. LPME, owing to its high specificity, was shown to be better suited than conventional LLE and SPE for the clean-up of urinary AAS glucuronides. The LPME/LC/MS/MS method was fast and reliable, offering acceptable reproducibility and linearity with detection limits in the range 2-20 ng ml(-1) for most of the selected AAS glucuronides. The method was successfully applied to in vitro metabolic studies, and also tested with an authentic forensic urine sample. For a urine matrix the method still has some unsolved problems with specificity, which should be overcome before the method can be reliably used for doping analysis, but still offering additional and complementary data for current GC/MS analyses.     

Liquid-phase microextraction of protein-bound drugs under non-equilibrium conditions

Recently, we introduced an inexpensive and disposable hollow fiber-based device for liquid-phase microextraction (LPME) where ionic analytes typically were extracted and preconcentrated from 1-4 mL aqueous samples (such as plasma and urine) through an organic solvent immobilized in the pores of a polypropylene hollow fiber and into a 10-25 microL volume of acceptor phase present inside the lumen of the hollow fiber. Subsequently, the acceptor phase was directly subjected to the final analysis by a chromatographic or electrophoretic method. In the present work, attention was focused on LPME of the basic drugs amphetamine, pethidine, promethazine, methadone and haloperidol characterized by substantial differences in the degree of protein binding. Drug-protein interactions in plasma resulted in reduced recoveries and substantially increased extraction times compared with extraction of the drugs from a pure water matrix. However, by addition of 5-50% methanol to the plasma samples, recoveries were comparable with LPME from water samples and ranged between 75 and 100%. The addition of methanol was found not to speed up the LPME process and extractions from plasma were performed in 45 min to reach equilibrium. Because approximately 55-70% of the final analyte concentrations were achieved within the initial 10 min of the LPME process, validation was accomplished after 10 and 45 min of LPME. In general, the results with 10 and 45 min were almost comparable, with precision data in the range 1.2-11.1% (RSD) and with linearity in the concentration range 20-1000 ng mL(-1) (r = 0.999). In conclusion, excellent LPME results may be achieved in a short time under non-equilibrium conditions with a minor loss of sensitivity. In cases of drug-protein interactions, methanol may be added to ensure a high extraction recovery.