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1.
Acta Mathematica Hungarica - Minkowski’s classical existence theorem provides necessary and sufficient conditions for a Borel measure on the unit sphere of Euclidean space to be the surface... 相似文献
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Dmytro Makarov András Telek Tobias Becker Marie-Kristin von Wrisberg Sabine Schneider Pavel Kielkowski 《Journal of mass spectrometry : JMS》2022,57(3):e4812
The identification and quantification of modified peptides are critical for the functional characterization of post-translational protein modifications (PTMs) to elucidate their biological function. Nowadays, quantitative mass spectrometry coupled with various bioinformatic pipelines has been successfully used for the determination of a wide range of PTMs. However, direct characterization of low abundant protein PTMs in bottom-up proteomic workflow remains challenging. Here, we present the synthesis and evaluation of tandem mass spectrometry tags (TMT) which are introduced via click-chemistry into peptides bearing alkyne handles. The fragmentation properties of the two mass tags were validated and used for screening in a model system and analysis of AMPylated proteins. The presented tags provide a valuable tool for diagnostic peak generation to increase confidence in the identification of modified peptides and potentially for direct peptide-PTM quantification from various experimental conditions. 相似文献
3.
Hendrik Schneider Lukas Deweid Thomas Pirzer Desislava Yanakieva Simon Englert Bastian Becker Dr. Olga Avrutina Prof. Dr. Harald Kolmar 《ChemistryOpen》2019,8(3):354-357
Antibody-drug conjugates (ADCs) are multicomponent biomolecules that have emerged as a powerful tool for targeted tumor therapy. Combining specific binding of an immunoglobulin with toxic properties of a payload, they however often suffer from poor hydrophilicity when loaded with a high amount of toxins. To address these issues simultaneously, we developed dextramabs, a novel class of hybrid antibody-drug conjugates. In these architectures, the therapeutic antibody trastuzumab is equipped with a multivalent dextran polysaccharide that enables efficient loading with a potent toxin in a controllable fashion. Our modular chemoenzymatic approach provides an access to synthetic dextramabs bearing monomethyl auristatin as releasable cytotoxic cargo. They possess high drug-to-antibody ratios, remarkable hydrophilicity, and high toxicity in vitro. 相似文献
4.
Dr. Dominique Bruns Dr. Daniel Merk Dr. Karthiga Santhana Kumar PD Dr. Martin Baumgartner Prof. Dr. Gisbert Schneider 《ChemistryOpen》2019,8(10):1303-1308
Constructive machine learning aims to create examples from its learned domain which are likely to exhibit similar properties. Here, a recurrent neural network was trained with the chemical structures of known cell-migration modulators. This machine learning model was used to generate new molecules that mimic the training compounds. Two top-scoring designs were synthesized, and tested for functional activity in a phenotypic spheroid cell migration assay. These computationally generated small molecules significantly increased the migration of medulloblastoma cells. The results further corroborate the applicability of constructive machine learning to the de novo design of druglike molecules with desired properties. 相似文献
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Jonathan Pansieri Igor A. Iashchishyn Hussein Fakhouri Lucija Ostoji Mantas Malisauskas Greta Musteikyte Vytautas Smirnovas Matthias M. Schneider Tom Scheidt Catherine K. Xu Georg Meisl Tuomas P. J. Knowles Ehud Gazit Rodolphe Antoine Ludmilla A. Morozova-Roche 《Chemical science》2020,11(27):7031
The mechanism of amyloid co-aggregation and its nucleation process are not fully understood in spite of extensive studies. Deciphering the interactions between proinflammatory S100A9 protein and Aβ42 peptide in Alzheimer''s disease is fundamental since inflammation plays a central role in the disease onset. Here we use innovative charge detection mass spectrometry (CDMS) together with biophysical techniques to provide mechanistic insight into the co-aggregation process and differentiate amyloid complexes at a single particle level. Combination of mass and charge distributions of amyloids together with reconstruction of the differences between them and detailed microscopy reveals that co-aggregation involves templating of S100A9 fibrils on the surface of Aβ42 amyloids. Kinetic analysis further corroborates that the surfaces available for the Aβ42 secondary nucleation are diminished due to the coating by S100A9 amyloids, while the binding of S100A9 to Aβ42 fibrils is validated by a microfluidic assay. We demonstrate that synergy between CDMS, microscopy, kinetic and microfluidic analyses opens new directions in interdisciplinary research.Templating mechanism of S100A9 amyloids on Aβ fibrillar surfaces during amyloid co-aggregation process was revealed by synergy of biophysical methods including charge detection mass spectrometry, microscopy, kinetic and microfluidic analyses. 相似文献
8.
Matti Schneider 《Mathematical Methods in the Applied Sciences》2015,38(13):2761-2778
The FFT‐based homogenization method of Moulinec–Suquet has recently attracted attention because of its wide range of applicability and short computational time. In this article, we deduce an optimal a priori error estimate for the homogenization method of Moulinec–Suquet, which can be interpreted as a spectral collocation method. Such methods are well‐known to converge for sufficiently smooth coefficients. We extend this result to rough coefficients. More precisely, we prove convergence of the fields involved for Riemann‐integrable coercive coefficients without the need for an a priori regularization. We show that our L2 estimates are optimal and extend to mildly nonlinear situations and Lp estimates for p in the vicinity of 2. The results carry over to the case of scalar elliptic and curl ? curl‐type equations, encountered, for instance, in stationary electromagnetism. Copyright © 2014 John Wiley & Sons, Ltd. 相似文献
9.
Combination of hollow‐fiber‐supported liquid membrane and dispersive liquid–liquid microextraction as a fast and sensitive technique for the extraction of pesticides from grape juice followed by high‐performance liquid chromatography 下载免费PDF全文
Vanessa Dutra Silva Vanessa Simão Adriana Neves Dias Jeferson Schneider Carletto Eduardo Carasek 《Journal of separation science》2015,38(11):1959-1968
The simultaneous use of a hollow‐fiber‐supported liquid membrane and dispersive liquid–liquid microextraction for the determination of pesticides directly in grape juice was investigated. The detection and quantification were performed by liquid chromatography with diode array detection. The optimum extraction condition was reached by filling the pores of the membrane wall with dodecanol and using hexane/acetone as extraction/dispersion solvents. Salt addition had a highly negative effect on the extraction efficiency and the optimum extraction time was 60 min. The volume of hexane/acetone mixture and the sample pH did not affect the signal at the levels studied. Therefore, an intermediate amount of these solvents (250 μL; 1:7.5 v/v) and pH 6 were selected. The optimum desorption condition was obtained with acetonitrile and 10 min of desorption time. The linear working range varied from 58 to 500 μg/L (parathion‐methyl), 62–500 μg/L (difenoconazole) and 107–500 μg/L (chlorpyrifos), with correlation coefficients ranging from 0.9980–0.9942. The limits of detection and quantification found were, respectively, 17 and 58 μg/L for parathion‐methyl, 19 and 62 μg/L for difenoconazole and 32 and 107 μg/L for chlorpyrifos. The relative standard deviation ranged between 3.5 and 11.2%. 相似文献