Normal Coordinates Analysis for The M(NH3)2+ 4 Complex Ions in D4h and Td Symmetries. Simplified Molecular Models

A normal coordinates analysis for the M(NH₃)²⁺ ₄ complex ions in T_d symmetry (M = Zn, Cd, Co) and in D_4h symmetry (M = Cu, Pd, Pt) has been undertaken on the basis of a General Valence Force Field (GVFF), using simplified molecular models. Throughout the course of the present work, we have relaxed the point mass approximation for the NH₃-ligands in order to investigate, on a quantitative basis, some relevant ligand - framework coupling vibrations. The simplest molecular model able to accomplish this purpose is to treat the ammino group, in a linear ligator approximation. We show that these model calculations provide a satisfactory set of vibrational frequencies as well as consistent sets of force constants.     

Acceptor tuning effect on TPA-based organic efficient sensitizers for optoelectronic applications—quantum chemical investigation

Structural Chemistry - A new series of triphenylamine (TPA)-based organic dyes (A1-A4) are characterized and implemented as photosensitizers for dye-sensitized solar cells (DSSCs). In the...     

New 2-substituted 4-hydroxy-2H-1,2-benzothiazine-3-carboxamide 1,1-dioxides: Spectral and pharmacological properties

A series of 4-hydroxy-2H-1,2-benzothiazme-3-carboxamide 1,1-dioxides substituted on the sulfonamide nitrogen with ethoxycarbonylalkyl, cyanoalkyl and dialkylaminoalkyl groups was synthesized. Spectroscopic properties of the obtained products were analyzed. Findings from the pharmacological study of some of the compounds as antiinflammatory and analgesic agents are reported.     

Characterization of <Emphasis Type="Italic">Pf</Emphasis>TrxR inhibitors using antimalarial assays and <Emphasis Type="Italic">in silico</Emphasis>techniques

Background

The compounds 1,4-napthoquinone (1,4-NQ), bis-(2,4-dinitrophenyl)sulfide (2,4-DNPS), 4-nitrobenzothiadiazole (4-NBT), 3-dimethylaminopropiophenone (3-DAP) and menadione (MD) were tested for antimalarial activity against both chloroquine (CQ)-sensitive (D6) and chloroquine (CQ)-resistant (W2) strains of Plasmodium falciparum through an in vitro assay and also for analysis of non-covalent interactions with P. falciparum thioredoxin reductase (PfTrxR) through in silico docking studies.

Results

The inhibitors of PfTrxR namely, 1,4-NQ, 4-NBT and MD displayed significant antimalarial activity with IC₅₀ values of?<?20 μM and toxicity against 3T3 cell line. 2,4-DNPS was only moderately active. In silico docking analysis of these compounds with PfTrxR revealed that 2,4-DNPS, 4-NBT and MD interact non-covalently with the intersubunit region of the enzyme.

Conclusions

In this study, tools for the identification of PfTrxR inhibitors using phenotyphic screening and docking studies have been validated for their potential use for antimalarial drug discovery project.

Open image in new window

     

Sunset decay of the convective turbulence with Large-Eddy Simulation under realistic conditions

Large-Eddy Simulation is performed for a single day from the Cooperative Atmosphere-Surface Exchange Study (CASES-99) field program. This study investigates an observed case of evening transition boundary layer over land. Parameters of the ambient atmosphere in the LES-decay studies conducted so far were typically prescribed in an idealized form. To provide suitable data under the wide range of the PBL weather conditions, the LES should be able to adequately reproduce the PBL turbulence dynamics including–if possible–baroclinicity, radiation, large scale advection and not only be related to a decreasing surface heating. In addition LES-decay studies usually assume that the sensible heat flux decreases instantaneously or with a very short time scale. The main purpose of this investigation is to study the decay of boundary-layer average turbulent kinetic energy at sunset with Large-Eddy Simulation that is forced with realistic environment conditions. This allows investigating the Turbulent Kinetic Energy decay over the realistic time scale that is observed in the atmosphere. During the intermediate and last stage of decay of the boundary-layer average Turbulent Kinetic Energy the exponents of the decay power law t⁻ⁿ$t^{-n}$ go from 2 to 6, as evidenced by experimental results and recent analytical modeling in the surface layer.     

Vibronic intensities in centrosymmetric coordination compounds of the rare earths Part II. A vibronic crystal field-closure-ligand polarisation model and applications to the PrCl6 and UBr6 complex ions in octahedral symmetry

A symmetry adapted formalism to evaluate the vibronic intensities induced by the ungerade vibrational modes in centrosymmetric coordination compounds of the rare earths is put forward and applied to several selected electronic transitions of the PrCl³⁻₆ and UCl²⁻₆ complex ions in octahedral symmetry. This current model is based upon a modified symmetry adapted version of the combined vibronic crystal field-closure-ligand polarisation approach. This model differs from that developed in Part I of this series, in that for the vibronic crystal field contribution to the total transition dipole moment, the closure procedure is employed rather than the utilisation of a truncated basis set for the central metal intermediate electronic states. A criterion is introduced to choose an appropriate set of phases for both the electronic and the vibrational coordinates so that to ensure the right sign for the interference term (which couples together both the vibronic crystal field and the vibronic ligand polarisation contributions to the total transition dipole moment). We have focused our attention on the modulation of the intermolecular force field and a version of a modified general valence force field has been adopted. The reasons for using this formalism rather than the superposition model (SM) are fully discussed in the text. Finally, it is shown that the agreement with experiment is satisfactory for most of the components of the transitions studied, despite the apparent simplicity of our model calculation. General master equations applicable to any f^N electronic configurations are derived to show the utility and flexibility of this current formalism.     

Synthesis of novel C-2 substituted pyrimidine nucleoside analogs

A series of 2-(2-oxoalkylidene)-4(1H)-pyrimidinone nucleoside analogs were synthesized by the addition of the lithium enolates of methylketones to 2,5′- and 2,2′-anhydrouridines and to 2,5′-anhydrothymidines. Alternatively, 2-thiouridine was alkylated with bromomethyl ketones to yield 2-(2-oxoalkyl)thio-4(1H)-pyrimidinone ribofuranosides in good yields. These intermediates were subsequently transformed into the title compounds via an Eschenmoser sulfur extrusion reaction. The 2-(2-oxoalkylidene)-4-(1H)-pyrimidinone nucleoside analogs exhibit enol proton signals in their ¹H nmr spectra indicative of hydrogen bonding between N-3 and keto oxygen. These structures offer functional groups with potential for Watson-Crick hydrogen bonding.