Real-time Imaging of Nascent DNA in Live Cells by Monitoring the Fluorescence Lifetime of DNA-Incorporated Thiazole Orange-Modified Nucleotides

A modified 2′-deoxycytidine triphosphate derivative ( dC^TOTP ) bearing a thiazole orange moiety tethered via an oligoethylene glycol linker was designed and synthesized. The nucleotide was incorporated into DNA by DNA polymerases in vitro as well as in live cells. Upon incorporation of dC^TOTP into DNA, the thiazole orange moiety exhibited a fluorescence lifetime that differed significantly from the non-incorporated (i.e. free and non-covalently intercalated) forms of dC^TOTP . When dC^TOTP was delivered into live U-2 OS cells using a synthetic nucleoside triphosphate transporter, it allowed us to distinguish and monitor cells that were actively synthesizing DNA in real time, from the very first moments after the treatment. We anticipate that this probe could be used to study chromatin organization and dynamics.     

7‐(2‐Oxoalkoxy)coumarins: Synthesis and Anti‐Inflammatory Activity of a Series of Substituted Coumarins

A series of 7‐(2‐oxoalkoxy)coumarins have been synthesized by conjugating substituted 7‐hydroxycoumarins with different chloroketones. The anti‐inflammatory properties of 7‐(2‐oxoalkoxy)coumarins were studied in LPS‐induced inflammatory response in J774 macrophages. Western blot was used to determine the expression of iNOS and COX‐2, NO was determined by measuring its metabolite nitrite by Griess reaction and IL‐6 was measured by ELISA. Seventeen of the studied compounds inhibited NO and IL‐6 production over 50% at 100 μM concentrations. IC₅₀ values of the best inhibitors were 21 μM/24 μM (NO/IL‐6) for compound 12 and 30 μM/10 μM (NO/IL‐6) for compound 20 . The main result was that the substitution with 7‐(2‐oxoalkoxy) group improved the anti‐inflammatory properties of most of the investigated 7‐hydroxycoumarins.     

Modal testing of an avlb bridge

Experimental Techniques -     

Optical sensing of parameters crucial for Japanese woodblock print making

Traditional Japanese woodblock printing is a centuries old art form. This time-honoured form of art is at risk of extinction as a consequence of the increasing lack of availability of wild cherry trees, which are a traditionally used woodblock material. Solutions for this material problem have been investigated for several years, but none of the tested materials has been sufficient when compared with the watercolour print quality imprinted by wild cherry woodblocks. To contribute to overcoming this material problem, we have investigated the physical properties of heat-treated woodblock materials made from different wood species. The International Commission on Illumination (CIE) tristimulus values, the CIELAB coordinates, the total reflectance, and the gloss, as well as, the water contact angle from the woodblock surface is observed to have a strong relation to the surface treatment of a woodblock. The surface treatment of a woodblock, in turn, relates to its water delivery, which is the basis for watercolour printing.     

Diastereoselective cycloaddition of (S)-N-(1-phenylethylimino)trifluoropropionate and trifluoroethylphosphonate with diazomethane

The cycloaddition reaction of (S)-(α-phenylethylimino)trifluoropropionate with diazomethane leads to a diastereomeric mixture (4.5:1) of 5-trifluoromethyl-1,2,3-triazoline-5-carboxylates. Enantiopure diastereomers were isolated by column chromatography and converted into their respective non-racemic 2-trifluoromethyl-aziridine-2-carboxylates and carboxylic acids. The absolute configuration of newly formed stereogenic centers was determined by XRD analysis. The stereoselective reaction between (S)-N-(α-phenylethyl)trifluoroacetimidoylphosphonate and diazomethane produces a diastereomeric mixture (2.5:1) of 5-trifluoromethyltriazoline-5-phosphonates readily separated by column chromatography in diastereomerically pure forms.     

Tracking water's response to structural changes in Nafion membranes

As the water content of Nafion membranes increases, the local environments of water molecules change due to reorganization of the pendant side chains in the hydrophilic domains. Changes in local structure as a function of water content are studied by measuring the IR spectra and the vibrational lifetimes of the hydroxyl stretch of dilute HOD in H(2)O. The main features of the IR spectra are fit well by a weighted sum of the spectra of bulk water and almost dry Nafion, suggesting a two-environment model. An additional small peak on the high frequency side of the main band associated with non-hydrogen-bonded water embedded in the polymer near the interface is analyzed quantitatively as a function of the membrane water content. The spectra of this peak show that a significant reorganization of the interfacial region occurs when the water content of the membrane exceeds the threshold for ion conduction. Vibrational excited state population relaxation times (lifetimes) of the main band lengthen substantially as the water content of the membrane is decreased. The population decays are not single exponentials and indicate that multiple ensembles of water molecules exist, and the characteristics of the individual ensembles change with water content. This is in contrast to the spectra of the main water absorption band, which is only sensitive to two classes of water molecules.     

Water at the surfaces of aligned phospholipid multibilayer model membranes probed with ultrafast vibrational spectroscopy

The dynamics of water at the surface of artificial membranes composed of aligned multibilayers of the phospholipid dilauroyl phosphatidylcholine (DLPC) are probed with ultrafast polarization selective vibrational pump-probe spectroscopy. The experiments are performed at various hydration levels, x = 2 - 16 water molecules per lipid at 37 degrees C. The water molecules are approximately 1 nm above or below the membrane surface. The experiments are conducted on the OD stretching mode of dilute HOD in H 2O to eliminate vibrational excitation transfer. The FT-IR absorption spectra of the OD stretch in the DLPC bilayer system at low hydration levels shows a red-shift in frequency relative to bulk water, which is in contrast to the blue-shift often observed in systems such as water nanopools in reverse micelles. The spectra for x = 4 - 16 can be reproduced by a superposition of the spectra for x = 2 and bulk water. IR Pump-probe measurements reveal that the vibrational population decays (lifetimes) become longer as the hydration level is decreased. The population decays are fit well by biexponential functions. The population decays, measured as a function of the OD stretch frequency, suggest the existence of two major types of water molecules in the interfacial region of the lipid bilayers. One component may be a clathrate-like water cluster near the hydrophobic choline group and the other may be related to the hydration water molecules mainly associated with the phosphate group. As the hydration level increases, the vibrational lifetimes of these two components decrease, suggesting a continuous evolution of the hydration structures in the two components associated with the swelling of the bilayers. The agreement of the magnitudes of the two components obtained from IR spectra with those from vibrational lifetime measurements further supports the two-component model. The vibrational population decay fitting also gives an estimation of the number of phosphate-associated water molecules and choline-associated water molecules, which range from 1 to 4 and 1 to 12, respectively, as x increases from 2 to 16. Time-dependent anisotropy measurements yield the rate of orientational relaxation as a function of x. The anisotropy decay is biexponential. The fast component is almost independent of x, and is interpreted as small orientational fluctuations that occur without hydrogen-bond rearrangement. The slower component becomes very long as the hydration level decreases. This component is a measure of the rate of complete orientational randomization, which requires H-bond rearrangement and is discussed in terms of a jump reorientation model.