Dissecting Cooperative Communications in a Protein with a High‐Throughput Single‐Molecule Scalpel

Miscued communication often leads to misfolding and aggregation of the proteins involved in many diseases. Owing to the ensemble average property of conventional techniques, detailed communication diagrams are difficult to obtain. Mechanical unfolding affords an unprecedented perspective on cooperative transitions by observing a protein along a trajectory defined by two mutated cysteine residues. Nevertheless, this approach requires tedious sample preparation at the risk of altering native protein conformations. To address these issues, we applied click chemistry to tether a protein to the two dsDNA handles through primary amines in lysine residues as well as at the N terminus. As a proof of concept, we used laser tweezers to mechanically unfold and refold calmodulin along 36 trajectories, maximally allowed by this strategy in a single batch of protein preparation. Without a priori knowledge of the particular residues to which the double‐stranded DNA handles attach, we used hierarchical cluster analysis to identify 20 major trajectories, according to the size and the pattern of unfolding transitions. We dissected the cooperativity into all‐or‐none and partially cooperative events, which represent strong and weak high‐order interactions in proteins, respectively. Although the overall cooperativity is higher within the N or C lobe than that between the lobes, the all‐or‐none cooperativity is anisotropic among different the unfolding trajectories and becomes relatively more predominant when the size of the protein segments increases. The average cooperativity for all‐or‐none transitions falls within the expected range observed by ensemble techniques, which supports the hypothesis that unfolding of a free protein can be reconstituted from individual trajectories.     

Synthesis,antioxidant, and antimicrobial activity of 3-(1H-indole-3-carbonyl)-2H-chromen-2-ones

A simple and convenient method for the one-pot synthesis of 3-(1H-indole-3-carbonyl)-2H-chromen-2-one derivatives from the reaction of 3-cyanoacetyl indole and salicylaldehyde in the presence of Na₂CO₃ in water: methanol (1:1) is described. Wider substrate scope, high yields, operational simplicity, and simple purification process make the protocol highly applicable in the synthesis of 3-(1H-indole-3-carbonyl)-2H-chromen-2-ones. For the first time, in vitro antioxidant and antimicrobial activity was studied. Compounds 5e , 7a , and 7b exhibits good radical scavenging ability against DPPH free radical. Compounds 7b , 5f , and 5g possess lower EC₅₀ values than the Standards AA and BHA and thus proving their high reducing power. Compounds 5d and 5f show good antibacterial activity against gram-positive bacteria (MRSA) while compounds 5c , 7a , and 7b exhibits good antibacterial activity against Bacillus sp. Compounds 5b and 5e show good antibacterial activity against gram negative bacterial strains (Escherichia coli, Klebsiella pneumoniae) and compounds 5g and 5h exhibits good antifungal activity against Candida albicans.     

FTIR SPECTRAL STUDIES OF THE BINARY SOLUTIONS OF ACETONE WITH XYLENE ISOMERS

Journal of Structural Chemistry - FTIR spectra of neat acetone (ACT), xylene isomers (o-xylene (OXY), m-xylene (MXY), and p-xylene (PXY)) and their binary solutions at various ACT molar...     

Self-assembled nanoribbons and nanotubes in water: energetic vs entropic networks

We present a comparative investigation of two opposite classes of self-assembled fibrillar networks. Ribbons and tubes having cross-sectional dimensions in the nanoscale can be formed in aqueous solutions of steroids derived, respectively, from deoxycholic (DC) and lithocholic (LC) acids. Rheological features distinguish energetic networks of DC ribbons rigidly fixed in cylindrical bundles and entropic transient networks of LC tubes weakly interacting in shear-sensitive suspensions. The two classes are characterized by their frequency sweep profiles, viscoelastic linear domains, scaling laws of the elastic shear modulus vs concentration, kinetics of formation of the networks, and their optical birefringence aspects. A theoretical context for networks of rigid fibers is used to account for the scaling exponents α in the G’ (and σ*) ∝C ^α laws (α=2.0 and 1.0, respectively, for DC and LC). The evolution observed in DC gels from ribbons to cylindrical fibers with monodisperse sections made up with four ribbons is an indication of an equilibrated balance between face-to-face attractions and untwisting elastic processes of the constitutive ribbons.Paper presented at the Annual Meeting of the European Society of Rheology, Grenoble, April 2005     

BLEND MEMBRANES FOR DIRECT METHANOL AND PROTON EXCHANGE MEMBRANE FUEL CELLS

Sulphonated polystyrene ethylene butylene polystyrene(SPSEBS)prepared with 35%sulphonation was found to be highly elastic and enlarged up to 300%-400%of its initial length.It absorbed over 110%of water by weight.A major drawback of this membrane is its poor mechanical properties which are not adequate for use as polymer electrolytes in fuel cells.To overcome this,SPSEBS was blended with poly(vinylidene fluoride)(PVDF),a hydrophobic polymer.The blend membranes showed better mechanical properties than the base polymer.The effect of PVDF content on water uptake,ion exchange capacity and proton conductivity of the blend membranes was investigated.This paper presents the results of recent studies applied to develop an optimized in-house membrane electrode assembly(MEA)preparation technique combining catalyst ink spraying and assembly hot pressing.Easy steps were chosen in this preparation technique in order to simplify the method,aiming at cost reduction.The open circuit voltage for the cell with SPSEBS is 0.980 V which is higher compared to that of the cell with Nafion 117(0.790 V).From this study,it is concluded that a polymer electrolyte membrane suitable for proton exchange membrane fuel cell(PEMFC)and direct methanol fuel cell(DMFC)application can be obtained by blending SPSEBS and PVDF in appropriate proportions.The methanol permeability and selectivity showed a strong influence on DMFC performance.     

Synthesis,structure, CMC values,thermodynamics of micellization,steady-state photolysis and biological activities of hexadecylamine cobalt(III) dimethyl glyoximato complexes

Metallosurfactant complexes of the type trans- [Co(DH)₂(HA)X], where DH = Dimethyl glyoxime, HA = Hexadecyl amine and X = Cl⁻, Br⁻, I⁻, N₃ ⁻, NO₂ ⁻ or SCN⁻, were synthesized and characterized by physico-chemical and spectroscopic methods. In addition, the single crystal X-ray structure of the ionic complex trans-[Co(DH)₂(HA)₂][Co(DH)₂(I)₂)] is presented. The critical micelle concentration values of the complexes in ethanol were obtained by measuring the absorption at 290 nm. Specific conductivity data (at 303–313 K) served for the evaluation of the thermodynamics of micellization ) \left( {\Updelta G^{0}_{{{\text{m}}}}, \Updelta H^{0}_{{{\text{m}}}}, \Updelta S^{0}_{\text{m}} } \right) . Steady-state photolysis, cyclic voltammetry and biological activities of the complexes were studied. The compounds were tested for antimicrobial activity.     

A novel bimediator amperometric sensor for electrocatalytic oxidation of gallic acid and reduction of hydrogen peroxide

A novel bimediator amperometric sensor is fabricated for the first time by surface modification of graphite electrode with thionine (TH) and nickel hexacyanoferrate (NiHCF). The electrochemical behavior of the TH/NiHCF bimediator modified electrode was characterized by cyclic voltammetry, differential pulse voltammetry and chronoamperometry. The TH/NiHCF bimediator modified electrode exhibited a pair of distinct redox peaks for NiHCF and TH with formal potentials of 0.33 V and −0.27 V vs. SCE at a scan rate of 50 mV s⁻¹ in 0.1 M NaNO₃ and 0.1 M NH₄NO₃ respectively. The electrocatalytic activity of the bimediator modified electrode towards oxidation of gallic acid with NiHCF and reduction of hydrogen peroxide with TH was evaluated and it was observed that the modified electrode showed an electrocatalytic activity towards the oxidation of gallic acid in the concentration range of 4.99 × 10⁻⁶–1.20 × 10⁻³ M with a detection limit of 1.66 × 10⁻⁶ M (S/N = 3) and reduction of H₂O₂ in the concentration range of 1.67 × 10⁻⁶–1.11 × 10⁻³ M with a detection limit of 5.57 × 10⁻⁷ M (S/N = 3). The bimediator modified electrode was found to exhibit good stability and reproducibility.     

SULPHONATED POLY ETHER ETHER KETONE/ POLYVINYL ALCOHOL/PHOSPHOTUNGSTIC ACID COMPOSITE MEMBRANES FOR PEM FUEL CELLS

Composite membranes with polyvinyl alcohol (PVA),sulphonated poly ether ether ketone (SPEEK) and phosphotungstic acid (PWA) were prepared using solvent casting method.The proton conductivities of such membranes were found to be in the order of 10~(-3) S/cm in the fully hydrated condition at room temperature as measured by impedance spectroscopy.The crystalline properties were studied by X-ray diffraction analysis.The thermal properties were determined by TGA and DSC techniques.The tensile strength and pe...