An Improved Measurement of Isotopic Ratios by High Resolution Mass Spectrometry

The study of protein kinetics requires an accurate measurement of isotopic ratios of peptides. Although Fourier transform-ion cyclotron resonance (FT-ICR) mass spectrometers yield accurate mass measurements of analytes, the isotopologue ratios are consistently lower than predicted. Recently, we demonstrated that the magnitude of the spectral error in the FT-ICR mass spectrometer is proportional to the scan duration of ions. Here, we present a novel isotopic ratio extrapolation (IRE) method for obtaining accurate isotopic ratio measurements. Accuracy is achieved by performing scans with different duration and extrapolation of the data to the initial moment of the ion rotation; IRE minimizes the absolute isotopic ratio error to ≤1 %. We demonstrate the application of IRE in protein turnover studies using ²H₂O-metabolic labeling. Overall, this technique allows accurate measurements of the isotopic ratios of proteolytic peptides, a critical step for enabling routine studies of proteome dynamics.      

Supersymmetry and cohomology of graph complexes

Letters in Mathematical Physics - I describe a combinatorial construction of the cohomology classes in compactified moduli spaces of curves $$\widehat{Z}_{I}\in H^{*}\left( \bar{\mathcal...     

Asymptotically optimal pointwise and minimax quickest change-point detection for dependent data

We consider the quickest change-point detection problem in pointwise and minimax settings for general dependent data models. Two new classes of sequential detection procedures associated with the maximal “local” probability of a false alarm within a period of some fixed length are introduced. For these classes of detection procedures, we consider two popular risks: the expected positive part of the delay to detection and the conditional delay to detection. Under very general conditions for the observations, we show that the popular Shiryaev–Roberts procedure is asymptotically optimal, as the local probability of false alarm goes to zero, with respect to both these risks pointwise (uniformly for every possible point of change) and in the minimax sense (with respect to maximal over point of change expected detection delays). The conditions are formulated in terms of the rate of convergence in the strong law of large numbers for the log-likelihood ratios between the “change” and “no-change” hypotheses, specifically as a uniform complete convergence of the normalized log-likelihood ratio to a positive and finite number. We also develop tools and a set of sufficient conditions for verification of the uniform complete convergence for a large class of Markov processes. These tools are based on concentration inequalities for functions of Markov processes and the Meyn–Tweedie geometric ergodic theory. Finally, we check these sufficient conditions for a number of challenging examples (time series) frequently arising in applications, such as autoregression, autoregressive GARCH, etc.     

Complexation of Am(III) and Nd(III) by 1,10-Phenanthroline-2,9-Dicarboxylic Acid

The complexant 1,10-phenanthroline-2,9-dicarboxylic acid (PDA) is a planar tetradentate ligand that is more preorganized for metal complexation than its unconstrained analogue ethylendiiminodiacetic acid (EDDA). Furthermore, the backbone nitrogen atoms of PDA are aromatic, hence are softer than the aliphatic amines of EDDA. It has been hypothesized that PDA will selectively bond to trivalent actinides over lanthanides. In this report, the results of spectrophotometric studies of the complexation of Nd(III) and Am(III) by PDA are reported. Because the complexes are moderately stable, it was necessary to conduct these titrations using competitive equilibrium methods, competitive cation complexing between PDA and diethylenetriaminepentaacetic acid, and competition between ligand protonation and complex formation. Stability constants and ligand protonation constants were determined at 0.1 mol·L^?1 ionic strength and at 0.5 mol·L^?1 ionic strength nitrate media at 21 ± 1 °C. The stability constants are lower than those predicted from first principles and speciation calculations indicate that Am³⁺ selectivity over Nd³⁺ is less than that exhibited by 1,10-phenanthroline.     

Circular consecutive choosability of k‐choosable graphs

Let S(r) denote a circle of circumference r. The circular consecutive choosability ch_cc(G) of a graph G is the least real number t such that for any r≥χ_c(G), if each vertex v is assigned a closed interval L(v) of length t on S(r), then there is a circular r‐coloring f of G such that f(v)∈L(v). We investigate, for a graph, the relations between its circular consecutive choosability and choosability. It is proved that for any positive integer k, if a graph G is k‐choosable, then ch_cc(G)?k + 1 ? 1/k; moreover, the bound is sharp for k≥3. For k = 2, it is proved that if G is 2‐choosable then ch_cc(G)?2, while the equality holds if and only if G contains a cycle. In addition, we prove that there exist circular consecutive 2‐choosable graphs which are not 2‐choosable. In particular, it is shown that ch_cc(G) = 2 holds for all cycles and for K_{2, n} with n≥2. On the other hand, we prove that ch_cc(G)>2 holds for many generalized theta graphs. © 2011 Wiley Periodicals, Inc. J Graph Theory 67: 178‐197, 2011     

Unbounded Jacobi Matrices with a Few Gaps in the Essential Spectrum: Constructive Examples

We give explicit examples of unbounded Jacobi operators with a few gaps in their essential spectrum. More precisely a class of Jacobi matrices whose absolutely continuous spectrum fills any finite number of bounded intervals is considered. Their point spectrum accumulates to +?? and ???. The asymptotics of large eigenvalues is also found.     

Caractéristique directionnelle calculée et mesurée d'une sonde électrochimiqueCalculated and measured directional characteristic of an electrochemical probe

The present paper demonstrates how the directional characteristics of an actual three-segment electrodiffusional sensor can be calculated from the probe image. It was shown that utilization of ‘ideal’ directional characteristics lead to an important (up to 15^°) error in flow angle determination. The directional characteristics calculated from the probe image improve significantly (up to 50%) the accuracy of the flow angle measurements. To cite this article: F. Barbeu et al., C. R. Mecanique 330 (2002) 433–436.     

Superacid mediated hydroxyalkylation reaction of 1,2,3‐indanetrione: a theoretical study

Energies of mono‐ and multiprotonation for 1,2,3‐indanetrione and ninhydrin in triflic acid (TFSA) media were estimated at PBE0/aug‐cc‐pvtz//6‐31+G** level of theory. The reactivity of formed intermediates in the reaction of aromatic electrophilic substitution has been studied at the same level of theory. It appears that the basicity of carbonyl groups in 1,2,3‐indanetrione is extremely low due to mutual influences of carbonyl groups. Carbonyl 2 is the least basic but the most reactive in accordance with experiment. Calculations demonstrated that monoprotonated intermediates are the principal reactive species in the reaction of hydroxyalkylation of 1,2,3‐indanetrione in TFSA. A new isomerization mechanism of 2,2‐diaryl‐1,3‐indanediones to 3‐(diarylmethylene)isobenzofuranones in TFSA media has been proposed. Copyright © 2010 John Wiley & Sons, Ltd.     

Metal-polymer PVDF/nickel composites and evaluation of their dielectric and thermal properties

Dielectric properties, thermal stability and sub-molecular structure of metal-polymer composites on the basis of polyvinylidene fluoride (PVDF) modified by sub-micro sized nickel powder were studied in this work by different methods such as dielectric spectroscopy, resistivity measurement, breakdown strength measurement, differential scanning calorimetry and optical microscopy. It was found that modification of PVDF by nickel particles results in the increase of both the volume resistivity by a factor of 1.24…15 and the melting and decomposition temperature by 5 °C and 48 °C for composite with an optimal nickel content compared with non-modified PVDF.