Probabilistic error bounds on constraint violation for empirical-analytical Lagrangian models of motion

Nonlinear Dynamics - In contrast to many systems studied in the field of classical mechanics, models of animal motion are often distinguished in that they are both highly uncertain and evolve in a...     

Base-Pairing Properties of Double-Headed Nucleotides

Nucleotides that contain two nucleobases (double-headed nucleotides) have the potential to condense the information of two separate nucleotides into one. This presupposes that both bases must successfully pair with a cognate strand. Here, double-headed nucleotides that feature cytosine, guanine, thymine, adenine, hypoxanthine, and diaminopurine linked to the C2′-position of an arabinose scaffold were developed and examined in full detail. These monomeric units were efficiently prepared by convergent synthesis and incorporated into DNA oligonucleotides by means of the automated phosphoramidite method. Their pairing efficiency was assessed by UV-based melting-temperature analysis in several contexts and extensive molecular dynamics studies. Altogether, the results show that these double-headed nucleotides have a well-defined structure and invariably behave as functional dinucleotide mimics in DNA duplexes.     

Aminomethyl Transfer (Mannich) Reactions Between an O-Triethylsilylated Hemiaminal and Anilines,RnC6H5−nNH2 Leading to New Diamines,Triamines, Imines,or 1,3,5-Triazines Dependent upon Substituent R

The reactions of the Mannich reagent Et₃SiOCH₂NMe₂ ( 1 ) with a variety of anilines (mono-substituted RC₆H₄NH₂, R=H, 4-CN, 4-NO₂, 4-Ph, 4-Me, 4-MeO, 4-Me₂N; di-substituted R₂C₆H₃NH₂, R₂=3,5-(CH₃)₂, 3,5-(CF₃)₂; tri-substituted R₃C₆H₂NH₂, R₃=3,5-Me₂-4-Br and a “super bulky” aniline (Ar*NH₂) [Ar*=2,6-bis(diphenylmethyl)-4-tert-butylphenyl]) led to the formation of a range of products dependent upon the substituent. With electron-withdrawing substituents, previously unknown diamines, RC₆H₄NH(CH₂NMe₂) [R=CN ( 2 a ), NO₂ ( 2 b )] and R₂C₆H₃NH(CH₂NMe₂) [R₂=3,5-(CF₃)₂ ( 2 c) ] were formed. Further reaction of 2 a , b , c with 1 yielded the corresponding triamines RC₆H₄N(CH₂NMe₂)₂ (R=CN ( 3 a ), NO₂ ( 3 b ) and R₂C₆H₃N(CH₂NMe₂)₂, R₂=3,5-(CF₃)₂ ( 3 c ). The new polyamines were characterized by NMR spectroscopy, and for 2 a , 2 c _, and 3 c , by single crystal XRD. In the case of electron-donating groups, R=4-OMe, 4-NMe₂, 4-Me, 3,5-Me₂, 3,5-Me₂-4-Br, and for R=4-Ph, the reactions with 1 immediately led to the formation of the related 1,3,5-triazines, R=4-MeO ( 5 a ), 4-Me₂N ( 5 b ), 4-Me ( 5 c ), 3,5-Me₂ ( 5 d ), 3,5-Me₂-4-Br ( 5 e ), 4-Ph ( 5 f ), 4-Cl ( 5 g ). The “super bulky” aniline rapidly produced a single product, namely the corresponding imine Ar*N=CH₂ ( 4 ) which was also characterized by single crystal XRD. Imine 4 is both thermally and oxidatively stable. All reactions are very fast, thus based upon the presence of Si we are tempted to denote the reactions of 1 as examples of “Silick” chemistry.     

Crystal Structure of 3-[1-(4-Methylphenyl)-9,10-dihydro-4-azaphenanthren-3-yl]benzo[f]coumarin

Crystallography Reports - The crystal structure of the title compound is determined by single crystal X-ray structure analysis. The structure was solved by direct method and refined to a final...     

Excited-State Dynamics of Thienoguanosine,an Isomorphic Highly Fluorescent Analogue of Guanosine

Thienoguanosine (^thG) is an isomorphic analogue of guanosine with promising potentialities as fluorescent DNA label. As a free probe in protic solvents, ^thG exists in two tautomeric forms, identified as the H1, being the only one observed in nonprotic solvents, and H3 keto–amino tautomers. We herein investigate the photophysics of ^thG in solvents of different polarity, from water to dioxane, by combining time-resolved fluorescence with PCM/TD-DFT and CASSCF calculations. Fluorescence lifetimes of 14.5–20.5 and 7–13 ns were observed for the H1 and H3 tautomers, respectively, in the tested solvents. In methanol and ethanol, an additional fluorescent decay lifetime (≈3 ns) at the blue emission side (λ≈430 nm) as well as a 0.5 ns component with negative amplitude at the red edge of the spectrum, typical of an excited-state reaction, were observed. Our computational analysis explains the solvent effects observed on the tautomeric equilibrium. The main radiative and nonradiative deactivation routes have been mapped by PCM/TD-DFT calculations in solution and CASSCF in the gas phase. The most easily accessible conical intersection, involving an out-of plane motion of the sulfur atom in the five-membered ring of ^thG, is separated by a sizeable energy barrier (≥0.4 eV) from the minimum of the spectroscopic state, which explains the large experimental fluorescence quantum yield.     

New chalcone based liquid crystals with allylidene amino linking unit: Synthesis and characterization

In this study, the synthesis, structural characterization and mesomorphic properties of newly thirteen calamitic shaped compounds derived from allylidene amino chalcone and 4-n-alkoxy benzoyloxy benzoic acid. Comp.H₁ to H₃ exhibited nonliquid crystalline nature, while comp.H₄ to comp.H₁₈ displayed enantiotropical smectic C phase. Phase transition temperatures of present synthesised compounds were determined by optical polarising microscopy (POM), differential scanning calorimetric (DSC) and powder X-ray diffraction (PXRD) techniques. Thermal stabilities of smectic to isotropic phase are 150.0 °C and temperature range of mesophase is in decreasing order from comp.H₃ to comp.H₁₈ respectively. The presences of SmC phase are the type of broken fan and needle type in present synthesized series. It is also shown that presence of chalcone amino allylidene central linking group favors a calamitic liquid crystalline behaviour in molecules with lower member to higher member aliphatic side chain in alkoxy group (-OR).     

Simultaneous high-performance thin-layer chromatography analysis of phytoconstituents and antioxidant potential of Inula grandiflora Willd. from India

JPC – Journal of Planar Chromatography – Modern TLC - The Inula genus has been used for the cure of pulmonary, heart diseases and also acts as a rejuvenator, immunomodulator in...