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ABSTRACT: BACKGROUND: Peptide: N glycanase (PNG) enzyme cleaves oligosaccharides from the misfolded glycoproteins and prepares them for degradation. This enzyme plays a role in the endoplasmic reticulum associated degradation (ERAD) pathway in yeast and mice but its biological importance and role in multicellular development remain largely unknown. RESULTS: In this study, the PNG from the cellular slime mold, Dictyostelium discoideum (DdPNG) was identified based on the presence of a common TG (transglutaminase) core domain and its sequence homology with the known PNGs. The domain architecture and the sequence comparison validated the presence of probable functional domains in DdPNG. The tertiary structure matched with the mouse PNG. Here we show that DdPNG is an essential protein, required for aggregation during multicellular development and a knock out strain of it results in small sized aggregates, all of which do not form fruiting bodies. The in situ hybridization and RT PCR results show higher level of expression during the aggregate stage. The expression gets restricted to the prestalk region during later developmental stages. DdPNG is a functional peptide-N-glycanase enzyme possessing deglycosylation activity, but does not possess any significant transamidation activity. CONCLUSIONS: We have identified and characterized a novel PNG from D. discoideum and confirmed its deglycosylation activity. The results emphasize the importance of PNG in aggregation during multicellular development of this organism.  相似文献   
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Dendrimers with redox cores can accept, donate, and/or store electrons and are used in nanoscale devices like artificial receptors, magnetic resonance imaging, sensors, light harvesting antennae, and electrical switches. However, the dendrimer molecular architectures can significantly alter the encapsulation of the redox core and charge transfer pathways, thereby changing the electron transfer rates. In this study, we used molecular dynamics simulations to investigate the role of solvent and peripheral groups on molecular structure and core encapsulation of iron-sulfur G2-benzyl ether dendrimers in polar and nonpolar solvent. We found that the dendrimer branches collapse in water and swell in chloroform. The presence of the long hydrophobic alkyl groups at the periphery deters the encapsulation of the core in water which may cause an increase in electron transfer rate. However, in chloroform, the dendrimer branches remain in the extended form, which leads to an increased radius of gyration. Our results suggest that peripheral alkyl chains in dendrimers cause steric hindrance, which prevents branches from back folding in chloroform solvent, but in water it reverses the trend. Overall, the presence of a hydrophobic interior and hydrophilic periphery in a dendrimer improves core encapsulation in water while hindering encapsulation in chloroform.  相似文献   
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Surfactants reduce the interfacial tension, amend the solid–liquid contact angle and greatly influence the capillarity action in unsaturated porous media. Solubility studies of surfactants in inducing similar flow through such medium has been described to be of great importance to hydrologists, agriculturists and for the people related with water sciences to confine the flow problems in water infiltration system, seepage delinquent and the underground disposal of wastewater. Present article reviews the current state of knowledge to understand such one dimensional, unsteady surfactant flow phenomenon due to the capillary pressure gradients and is represented mathematically using one parameter group theory of similarity analysis. For the sake of definiteness in the analysis, we assumed certain specific relationships viz. the permeability of the medium as a specific linear function of moisture content and time which are consistent with the physical problem. We have not included any graphical or numerical illustrations due to our particular interest in deriving the classical solution to our problem.  相似文献   
4.
The present study aims to establish a high-performance thin layer chromatography (HPTLC)-based comparative analysis, directed toward characterization of nucleobases in aqueous and alcoholic extracts of sea buckthorn leaves from three different varieties: Hippophae salicifolia, Hippophae rhamnoides mongolica, and Hippophae rhamnoides turkestanica. The alcoholic and aqueous leaf extracts from these sea buckthorn varieties were prepared using accelerated solvent extraction technique. A novel HPTLC method for separating and identifying six nucleobases, namely, guanosine, guanine, cytosine, adenine, uracil, and thymine were adopted. HPTLC analysis indicated the presence of one or more of these nucleobases in a total of six leaf extracts evaluated, their quantities varying from 0.23 to 7.76?µg nucleobase per mg of extract. Though a typical trend could not be observed in the values obtained, the extracts were found to be considerably rich with respect to nucleobase contents. The results acquired from HPTLC were subsequently validated by hyphenation with mass spectrometry and also by applying chemometric tools in form of heat maps, hierarchical cluster dendrograms, and principal component analysis. The presence of nucleobases in the leaf extracts was confirmed by HPLC as well but HPTLC proved to be a better approach for characterization of nucleobases in plant extracts, than high performance liquid chromatography (HPLC).  相似文献   
5.
The protein world has a hierarchical and redundant organization that can be specified in terms of evolutionary units of molecular structure, the protein domains. The Structural Classification of Proteins (SCOP) has unified domains into a comparatively small set of folding architectures, the protein fold families and superfamilies, and these have been further grouped into protein folds. In this study, we reconstruct the evolution of the protein world using information embedded in a structural genomic census of fold architectures defined by a phylogenomic analysis of 185 completely sequenced genomes using advanced hidden Markov models and 776 folds described in SCOP release 1.67. Our study confirms the existence of defined evolutionary patterns of architectural diversification and explores how phylogenomic trees generated from folds relate to those reconstructed from fold superfamilies. Evolutionary patterns help us propose a general conceptual model that describes the growth of architectures in the protein world. © 2006 Wiley Periodicals, Inc. Complexity 12: 27–40, 2006  相似文献   
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Blue copper proteins play a central role in various enzymatic anabolic/catabolic pathways in living cells by virtue of the integrated metal ions. These ions may exist in variable oxidation states, with suitable reduction potentials and fast electron-transfer rates which in turn is a manifestation of their unusual geometry and co-ordination. We report the electrochemical and spectral characterization of three novel complexes of copper (II) with N2S type tridentate chelating agent 2,2′-dithiodianiline (dta), having structural similarities to the active site of Type I copper proteins. High positive redox potentials in the range of 0.5–0.6 V vs Ag/AgCl electrode of the complexes and the absorption maxima at ~550 nm, with high extinction coefficients, correspond well with typical blue copper proteins. The IR and EPR studies support the assigned pseudo tetrahedral structures to the complexes. The diffusion coefficient and rate constant for heterogeneous charge transfer for Cu2+/Cu+ coordinated in a potentially bio-mimetic Type I site is reported.  相似文献   
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In this paper, we study (N, L) switch-over policy for machine repair model with warm standbys and two repairmen. The repairman (R1) turns on for repair only when N-failed units are accumulated and starts repair after a set up time which is assumed to be exponentially distributed. As soon as the system becomes empty, the repairman (R1) leaves for a vacation and returns back when he finds the number of failed units in the system greater than or equal to a threshold value N. Second repairman (R2) turns on when there are L(>N) failed units in the system and goes for a vacation if there are less than L failed units. The life time and repair time of failed units are assumed to be exponentially distributed. The steady state queue size distribution is obtained by using recursive method. Expressions for the average number of failed units in the queue and the average waiting time are established.  相似文献   
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