Special Issue: 18th International conference on mathematical optimization theory and operations research (MOTOR 2019)

Journal of Global Optimization -     

A scaling limit for the length of the longest cycle in a sparse random digraph

We discuss the length of the longest directed cycle in the sparse random digraph , constant. We show that for large there exists a function such that a.s. The function where is a polynomial in . We are only able to explicitly give the values , although we could in principle compute any .     

A control-theoretic perspective on optimal high-order optimization

Mathematical Programming - We provide a control-theoretic perspective on optimal tensor algorithms for minimizing a convex function in a finite-dimensional Euclidean space. Given a function...     

Finding a Hamiltonian cycle by finding the global minimizer of a linearly constrained problem

Computational Optimization and Applications - It has been shown that a global minimizer of a smooth determinant of a matrix function corresponds to the largest cycle of a graph. When it exists,...     

Global Attractor of a Dissipative Fractional Klein Gordon Schrödinger System

Journal of Dynamics and Differential Equations - In this paper we study the local and global well posedness of a fractional dissipative Klein–Gordon–Schrödinger type system in...     

A rapid and sensitive bioanalytical LC–MS/MS method for the quantitation of a novel CDK5 inhibitor 20–223 (CP668863) in plasma: Application to in vitro metabolism and plasma protein-binding studies

A rapid, selective, and sensitive liquid chromatography coupled with tandem mass spectrometry (MS/MS) method was developed and validated for the quantitation of the novel CDK5 inhibitor ‘20–223' in mouse plasma. Separation of analytes was achieved by a reverse-phase ACE Excel C₁₈ column (1.7 μm, 100 × 2.1 mm) with gradient elution using 0.1% formic acid (FA) in methanol and 0.1% FA as the mobile phase. Analytes were monitored by MS/MS with an electrospray ionization source in the positive multiple reaction monitoring mode. The MS/MS response was linear over the concentration range 0.2–500 ng/mL for 20–223. The within- and between-batch precision were within the acceptable limits as per Food and Drug Administration guidelines. The validated method was successfully applied to plasma protein binding and in vitro metabolism studies. Compound 20–223 was highly bound to mouse plasma proteins (>98% bound). Utilizing mouse S9 fractions, in vitro intrinsic clearance (CL_int) was 24.68 ± 0.99 μL/min/mg protein. A total of 12 phase I and II metabolites were identified with hydroxylation found to be the major metabolic pathway. The validate method required a low sample volume, was linear from 0.2 to 500 ng/mL, and had acceptable accuracy and precision.     

Topological studies related to molecular systems formed during the Big Bang: H3+ as an example

In the present article are analyzed the non-adiabatic coupling terms (NACT) for two molecular systems, namely H₃⁺ and H₃. In contrast to previous occasions in which the NACTs are studied along (closed) circular contours usually surrounding conical intersections (ci), in the present article are studied distribution of the NACTs in (planar) configuration spaces (CS). The motivation for this study has to do with a novel idea being mentioned earlier (Molec. Phys., 116, 2435 [2018]; ArXiv:1801.00103) that NACTs are like a Glue (eventually) associated with the ability of creating molecules and/or protecting them from breaking up. It was found that the distributions of the NACTs due to the two molecules are similar as long as the attention is given to regions close to their equilateral cis, but then they behave significantly different in other regions. In case of H₃⁺, the NACTs are distributed rather uniformly whereas, in case of H₃ they become spiky the closer they approach the diatom axis. The main conclusion of this study is that the glue which has its origin in the NACTs is most likely to be effective in case of H₃⁺ that explains the creation and later survival of this molecule.     

Origin and Prediction of Highly Specific Bond Cleavage Sites in the Thermal Activation of Intact Protein Ions

Predicting the fragmentation patterns of proteins would be beneficial for the reliable identification of intact proteins by mass spectrometry. However, the ability to accurately make such predictions remains elusive. An approach to predict the specific cleavage sites in whole proteins resulting from collision-induced dissociation by use of an improved electrostatic model for calculating the proton configurations of highly-charged protein ions is reported. Using ubiquitin, cytochrome c, lysozyme and β-lactoglobulin as prototypical proteins, this approach can be used to predict the fragmentation patterns of intact proteins. For sufficiently highly charged proteins, specific cleavages occur near the first low-basicity amino acid residues that are protonated with increasing charge state. Hybrid QM/QM′ (QM=quantum mechanics) and molecular dynamics (MD) simulations and energy-resolved collision-induced dissociation measurements indicated that the barrier to the specific dissociation of the protonated amide backbone bond is significantly lower than competitive charge remote fragmentation. Unlike highly charged peptides, the protons at low-basicity sites in highly charged protein ions can be confined to a limited sequence of low-basicity amino acid residues by electrostatic repulsion, which results in highly specific fragmentation near the site of protonation. This research suggests that the optimal charge states to form specific sequence ions of intact proteins in higher abundances than the use of less specific ion dissociation methods can be predicted a priori.     

Rate and Computational Studies for Pd-NHC-Catalyzed Amination with Primary Alkylamines and Secondary Anilines: Rationalizing Selectivity for Monoarylation versus Diarylation with NHC Ligands

The relative rates of arylation of primary alkylamines with different Pd-NHC catalysts have been measured, as have the relative rates of arylation of the secondary aniline product in an attempt to understand the key ligand design features necessary to have high selectivity for the monoarylated amine product. As the substituents on the N-aryl ring of the NHC increase in size, selectivity for monoarylation increases and this is further enhanced by chlorinating the back of the NHC ring. Computations have been performed on the catalytic cycle of this transformation in order to understand the selectivity obtained with the different catalysts.