Supramolecular Arrangement and DFT analysis of Zinc(II) Schiff Bases: An Insight towards the Influence of Compartmental Ligands on Binding Interaction with Protein

We report, for the first time, a detailed crystallographic study of the supramolecular arrangement for a set of zinc(II) Schiff base complexes containing the ligand 2,6-bis((E)-((2-(dimethylamino)ethyl)imino)methyl)-4-R-phenol], where R=methyl/tert-butyl/chloro. The supramolecular study acts as a pre-screening tool for selecting the compartmental ligand R of the Schiff base for effective binding with a targeted protein, bovine serum albumin (BSA). The most stable hexagonal arrangement of the complex [Zn − Me] (R=Me) stabilises the ligand with the highest FMO energy gap (ΔE=4.22 eV) and lowest number of conformations during binding with BSA. In contrast, formation of unstable 3D columnar vertebra for [Zn − Cl] (R=Cl) tend to activate the system with lowest FMO gap (3.75 eV) with highest spontaneity factor in molecular docking. Molecular docking analyses reported in terms of 2D LigPlot+ identified site A, a cleft of domains IB, IIIA and IIIB, as the most probable protein binding site of BSA. Arg144, Glu424, Ser428, Ile455 and Lys114 form the most probable interactions irrespective of the type of compartmental ligands R of the Schiff base whereas Arg185, Glu519, His145, Ile522 act as the differentiating residues with ΔG=−7.3 kcal mol⁻¹.     

Interaction of RuIII(EDTA) with cellular thiols and O2: biological implications thereof

Reaction of [Ru^III(EDTA)(CyS)]^2? (edta^4? = ethylenediaminetetraacetate; CySH = cysteine) with molecular oxygen (O₂) has been studied as a function of pH (4.0–8.0) and cysteine concentration (0.2–2.0 mM) at room temperature (25 °C). Biological activities of the [Ru(EDTA)]/CySH/O₂ system pertaining to cleavage of supercoiled plasmid DNA to its nicked open circular form has been explored in this work. Results are discussed in regard to the reaction of the ruthenium(III)-complex with molecular oxygen) and a working mechanism is proposed for the biological activities of the ruthenium(III)-complex in the presence of O₂.     

A Multifunctional Subphthalocyanine Nanosphere for Targeting,Labeling, and Killing of Antibiotic‐Resistant Bacteria

Developing a material that can combat antibiotic‐resistant bacteria, a major global health threat, is an urgent requirement. To tackle this challenge, we synthesized a multifunctional subphthalocyanine (SubPc) polymer nanosphere that has the ability to target, label, and photoinactivate antibiotic‐resistant bacteria in a single treatment with more than 99 % efficiency, even with a dose as low as 4.2 J cm⁻² and a loading concentration of 10 nM . The positively charged nanosphere shell composed of covalently linked SubPc units can increase the local concentration of photosensitizers at therapeutic sites. The nanosphere shows superior performance compared to corresponding monomers presumably because of their enhanced water dispersibility, higher efficiency of singlet‐oxygen generation, and phototoxicity. In addition, this material is useful in fluorescence labeling of living cells and shows promise in photoacoustic imaging of bacteria in vivo.     

A Highly Stabilizing Silver(I)‐Mediated Base Pair in Parallel‐Stranded DNA

The first parallel‐stranded DNA duplex with Hoogsteen base pairing that readily incorporates an Ag⁺ ion into an internal mispair to form a metal‐mediated base pair has been created. Towards this end, the highly stabilizing 6 FP ‐Ag⁺‐ 6 FP base pair comprising the artificial nucleobase 6‐furylpurine ( 6 FP ) was devised. A combination of temperature‐dependent UV spectroscopy, CD spectroscopy, and DFT calculations was used to confirm the formation of this base pair. The nucleobase 6 FP is capable of forming metal‐mediated base pairs both by the Watson–Crick edge (i.e. in regular antiparallel‐stranded DNA) and by the Hoogsteen edge (i.e. in parallel‐stranded DNA), depending on the oligonucleotide sequence and the experimental conditions. The 6 FP ‐Ag⁺‐ 6 FP base pair within parallel‐stranded DNA is the most strongly stabilizing Ag⁺‐mediated base pair reported to date for any type of nucleic acid, with an increase in melting temperature of almost 15 °C upon the binding of one Ag⁺ ion.     

Planar solidification of a warm flowing-liquid under different boundary conditions

Planar solidification of a warm flowing liquid with the convective heat transfer to the growing solid layer, has been analysed for the boundary conditions of constant temperature, constant heat flux and convective heat flux at the surface respectively. The mathematical formulation of the problem resulted in a coupled set of two differential equations in temperature and solid thickness as function of position, time and the problem parameters. Analytical expressions for the temperature distribution within the growing solid layer, the rate of solidification and the solidification time are obtained. The perturbation techniques employed here is simple and straight forward in contrast with the earlier techniques. Good agreement between the experimental results and the present solutions is obtained for the convective heat flux boundary condition. The results of this analysis are useful in the design and analysis of experiments dealing with freezing/melting in one dimension. The role of the parameter Stefan number which is small for phase change materials, is discussed in context with the storage of thermal energy.     

Elastic waves in a fiber-reinforced composite

The propagation of time-harmonic elastic waves in a fiber-reinforced composite is studied. The circular fibers are assumed to be parallel to each other and randomly distributed with a statistically uniform distribution. The direction of propagation and the associated particle motion are considered to be normal to the fibers. It is shown that the average waves in the composite separate into compressional and shear types. General formulae for the complex wave number giving the phase velocity and the damping are obtained. It is shown that these formulae lead to the Hashin-Rosen expressions for the transverse bulk modulus and the lower bound for the transverse rigidity, if the correlation in the positions of the fibers can be ignored. The correlation terms, for exponential correlation, are shown to have a significant effect on the damping property of the composite, especially at high frequencies and concentrations.     

Correction to: Effect of Basil antioxidant additive on the performance,combustion and emission characteristics of used cooking oil biodiesel in CI engine

Journal of Thermal Analysis and Calorimetry - The solid–liquid equilibria (SLE) of two binary mixtures of organic stabilizers for energetic materials, viz....