Isomeric effects on the self‐assembly of a plausible prebiotic nucleoside analogue: A theoretical study

The self‐assembly properties of N(9)‐(2,3‐dihydroxypropyl adenine) (DHPA), a plausible prebiotic nucleoside analogue of adenosine, were investigated using density functional theory. Two different isomers were considered, and it is found that while both isomers can form a variety of structures, including chains, one of them is also able to form cages and helixes. When these results were put in the context of substrate supported molecular self‐assembly, it is concluded that gas‐phase self‐assembly studies that consider isomer identity and composition not only can aid interpreting the experimental results, but also reveal structures that might be overlooked otherwise. In particular, this study suggest that a double‐helical structure made of DHPA molecules which could have implications in prebiotic chemistry and nanotechnology, is stable even at room temperature. For example electrical properties (energy gap of 4.52eV) and a giant permanent electrical dipole moment (49.22 Debye) were found in our larger double‐helical structure (3.7 nm) formed by 14 DHPA molecules. The former properties could be convenient for construction of organic dielectric‐based devices.     

Impact of Collection Volume and DNA Extraction Method on the Detection of Biomarkers and HPV DNA in First-Void Urine

The potential of first-void (FV) urine as a non-invasive liquid biopsy for detection of human papillomavirus (HPV) DNA and other biomarkers has been increasingly recognized over the past decade. In this study, we investigated whether the volume of this initial urine stream has an impact on the analytical performance of biomarkers. In parallel, we evaluated different DNA extraction protocols and introduced an internal control in the urine preservative. Twenty-five women, diagnosed with high-risk HPV, provided three home-collected FV urine samples using three FV urine collection devices (Colli-Pee) with collector tubes that differ in volume (4, 10, 20 mL). Each collector tube was prefilled with Urine Conservation Medium spiked with phocine herpesvirus 1 (PhHV-1) DNA as internal control. Five different DNA extraction protocols were compared, followed by PCR for GAPDH and PhHV-1 (qPCR), HPV DNA, and HBB (HPV-Risk Assay), and ACTB (methylation-specific qPCR). Results showed limited effects of collection volume on human and HPV DNA endpoints. In contrast, significant variations in yield for human endpoints were observed for different DNA extraction methods (p < 0.05). Additionally, the potential of PhHV-1 as internal control to monitor FV urine collection, storage, and processing was demonstrated.     

Multidimensional gas chromatography for the characterization of permanent gases and light hydrocarbons in catalytic cracking process

An integrated gas chromatographic system has been successfully developed and implemented for the measurement of oxygen, nitrogen, carbon monoxide, carbon dioxide and light hydrocarbons in one single analysis. These analytes are frequently encountered in critical industrial petrochemical and chemical processes like catalytic cracking of naphtha or diesel fuel to lighter components used in gasoline. The system employs a practical, effective configuration consisting of two three-port planar microfluidic devices in series with each other, having built-in fluidic gates, and a mid-point pressure source. The use of planar microfluidic devices offers intangible advantages like in-oven switching with no mechanical moving parts, an inert sample flow path, and a leak-free operation even with multiple thermal cycles. In this way, necessary features such as selectivity enhancement, column isolation, column back-flushing, and improved system cleanliness were realized. Porous layer open tubular capillary columns were employed for the separation of hydrocarbons followed by flame ionization detection. After separation has occurred, carbon monoxide and carbon dioxide were converted to methane with the use of a nickel-based methanizer for detection with flame ionization. Flow modulated thermal conductivity detection was employed to measure oxygen and nitrogen. Separation of all the target analytes was achieved in one single analysis of less than 12 min. Reproducibility of retention times for all compounds were found to be less than 0.1% (n = 20). Reproducibility of area counts at two levels, namely 100 ppm_v and 1000 ppm_v over a period of two days were found to be less than 5.5% (n = 20). Oxygen and nitrogen were found to be linear over a range from 20 ppm_v to 10,000 ppm_v with correlation coefficients of at least 0.998 and detection limits of less than 10 ppm_v. Hydrocarbons of interest were found to be linear over a range from 200 ppb_v to 1000 ppm_v with correlation coefficients of greater than 0.999 and detection limits of less than 100 ppb_v.     

Application of SSA thermal fractionation and X‐ray diffraction to elucidate comonomer inclusion or exclusion from the crystalline phases in poly(butylene succinate‐ran‐butylene azelate) random copolymers

Poly(butylene succinate‐ran‐butylene azelate) random copolyesters were thermally fractionated by successive self‐nucleation and annealing (SSA). The samples before and after SSA were analyzed by differential scanning calorimetry (DSC) and X‐ray diffraction (WAXS and SAXS). WAXS results indicate that a small degree of comonomer inclusion is present in the crystalline phases that are formed in the copolymers depending on composition: a PBS‐like unit cell or/and a PBAz‐like unit cell, thus confirming the isodimorphic behavior of the samples. SSA on the other hand demonstrated that the degree of comonomer exclusion during crystallization is far larger than comonomer inclusion, as judged by the increase in fractionation degree with compositions leading to the pseudo‐eutectic point. Furthermore, WAXS, SAXS, and SSA results show that the isodimorphic behavior is not highly dependent on kinetic factors, as the degree of comonomer inclusion or exclusion in the samples was not significantly altered by SSA thermal fractionation, a thermal treatment that promotes annealing and molecular segregation of defects to the amorphous regions of the material. © 2016 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2016 , 54, 2346–2358     

Dynamics of two interacting dipoles

We study the deterministic spin dynamic of two interacting magnetic moments with anisotropy and dipolar interaction under the presence of an applied magnetic field, by using the Landau–Lifshitz equation with and without a damping term. Due to different kinds of interactions, different time scales appear: a long time scale associated with the dipolar interaction and a short time scale associated with the Zeeman interaction. We found that the total magnetization is not conserved; furthermore, for the non-dissipative case it is a fluctuating function of time, with a strong dependence on the strength of the dipolar term. In the dissipative case there is a transient time before the total magnetization reaches its constant value. We examine this critical time as a function of the distance between the magnetic moments and the phenomenological damping coefficient, and found that it strongly depends on these control parameters.     

Dual-purpose gas chromatographic injection device for pressurized liquid and gas injection

A dual-purpose gas chromatographic injection device, capable of injecting pressurized liquid sample of up to 5000 psig and gas sample with a volume as high as 5000 μL, has been successfully developed and implemented. The injection device is synergized by the effectiveness of a classical flash vaporization of a syringe injection and the reliability of a proven rotary valve. Depending on the matrix involved, this injection device employs either a commercially available four-port internal valve for liquid sampling or a six-port external valve for gas sampling, a modified removable needle used in standard liquid syringe, and an auxiliary flow stream that can be either mechanical or electronic flow controlled for solute transfer. For pressurized liquid, the device was found suitable of up to nC₁₆ hydrocarbon with no observable carry-over despite the injection device was operating at ambient temperature. A relative standard deviation of less than 2% (n = 20) was obtained for hydrocarbon compounds ranging from nC₈ to nC₁₆. For gas injection, the device performed well even under difficult chromatographic conditions such as with a low column inlet pressure of less than 1 psig. A relative standard deviation of less than 0.5% (n = 10) was obtained for reactive sulfur compounds such as alkyl mercaptans. The device can be operated manually or automated with pneumatic or electrical actuator, is platform neutral, and can be moved amongst instruments without hardware modification as well as implemented for on-line or in situ applications. In this paper, the utility of the device was also demonstrated with selected GC applications of industrial significance.     

Crystallographically-oriented single-crystalline copper nanowire arrays electrochemically grown into nanoporous anodic alumina templates

Highly crystallographically-oriented single-crystalline copper nanowire arrays were electrochemically deposited into nanoporous commercial alumina templates. A gold/copper backward contact was needed in the template, while the nanowires were grown from a 0.5 M CuSO₄·5H₂O solution adjusted to pH=1. The kinetics of the growing process is studied by means of current vs. time curves. The pore filling is between 80 to 90%. The structure and morphology of the wires are studied by XRD, SEM and TEM. The wires have an average diameter of 150 nm corresponding to the pore diameter of the template, with the cubic face-centered copper structure. This structure is highly oriented along the [100] direction parallel to the wire axis. The preferential growing along this direction was not previously found in the literature, which may have interesting applications when such direction is required. PACS 81.05.Bx; 82.45.Qr; 81.07.-b