Coupling Effects of Electrostatic Interactions and Salt Concentration Gradient in Polymer Translocation through a Nanopore: A Coarse-Grained Molecular Dynamics Simulations Study

We study the influence of polymer pore interactions and focus on the role played by the concentration gradient of salt in the translocation of polyelectrolytes (PE) through nanopores explicitly using coarse-grained Langevin dynamics simulations. The mean translocation time is calculated by varying the applied voltage, the pH, and the salt concentration gradient. Changing the pH can alter the electrostatic interaction between the protein pore and the polyelectrolyte chain. The polymer pore interaction is weakened by the increase in the strength of the externally applied electric field that drives translocation. Additionally, the screening effect of the salt can reduce the strong charge-charge repulsion between the PE beads which can make translocation faster. The simulation results show there can be antagonistic or synergistic coupling between the salt concentration-induced screening effect and the drift force originating from the salt concentration gradient thereby affecting the translocation time. Our simulation results are explained qualitatively with free energy calculations.     

Finite Inhomogeneous Shearing Deformations of a Transversely Isotropic Incompressible Material

The present paper deals with finite inhomogeneous shearing deformations of a slab of a special anisotropic solid. Two cases according to the directions of the anisotropic director of the medium are examined. In one case the solution reduces to a quadrature and gives an exact deformation field for particular values of the material constants. In the other case an exact solution is obtained. All such solutions reduce to the same existing solution for the corresponding isotropic elastic material. This revised version was published online in August 2006 with corrections to the Cover Date.     

Structural,electronic, and mechanical properties of cubic TiO_2:A first-principles study

We present an analysis of structural, electronic, and mechanical properties of cubic titanium dioxide(TiO_2) using an all electron orthogonalzed linear combinations of atomic orbitals(OLCAO) basis set under the framework of density functional theory(DFT). The structural property, especially the lattice constant a, and the electronic properties such as the band diagram and density of states(DOS) are studied and analyzed. The mechanical properties such as bulk moduli, shear moduli, Young's Moduli, and Poison's ratio are also investigated thoroughly. The calculations are carried out on shear moduli and anisotropy factor for cubic TiO_2. The Vickers hardness is also tested for fluorite and pyrite cubic-structured TiO_2. Furthermore, the results are compared with the previous theoretical and experimental results. It is found that DFTbased simulation produces results which are approximation to experimental results, whereas the calculated elastic constants are better than the previous theoretical and experimental values.     

Structure-Based Design,Synthesis, and Biological Evaluation of Hsp90β-Selective Inhibitors

The 90 kDa heat shock proteins (Hsp90) are molecular chaperones that are responsible for the folding and/or trafficking of ∼400 client proteins, many of which are directly associated with cancer progression. Consequently, inhibition of Hsp90 can exhibit similar activity as combination therapy as multiple signaling nodes can be targeted simultaneously. In fact, seventeen small-molecule inhibitors that bind the Hsp90 N-terminus entered clinical trials for the treatment of cancer, all of which exhibited pan-inhibitory activity against all four Hsp90 isoforms. Unfortunately, most demonstrated undesired effects alongside induction of the pro-survival heat shock response. As a result, isoform-selective inhibitors have been sought to overcome these detriments. Described herein is a structure-based approach to design Hsp90β-selective inhibitors along with preliminary SAR. In the end, compound 5 was shown to manifest ∼370-fold selectivity for Hsp90β versus Hsp90α, and induced the degradation of select Hsp90β-dependent clients. These data support the development of Hsp90β-selective inhibitors as a new paradigm to overcome the detriments associated with pan-inhibition of Hsp90.     

Simulated annealing‐based optimal control over tunneling process through SDWP and Eckart barrier: A momentum basis representation

For a reaction to proceed via tunneling mechanism, it is essential that the reactants will cross the potential barrier (E_P), where its initial energy (E₀) is below the potential barrier E_P. Tunneling probability τ is defined as the probability of having momentum higher than k_m, where . In the momentum basis representation, τ can be directly calculated by integrating from the limit k_m to infinity, where is the wave function in the momentum space. Instead of the continuous basis, if we chose momentum grid space, τ can be expressed as . Our target here is to increase this τ by applying a polychromatic field, so that the reaction rate can be enhanced. By applying Simulated Annealing technique we have designed some polychromatic electric fields, spatially symmetric and asymmetric type, which enhances the tunneling rate in symmetric double well system and Eckart barrier confined in an infinite well.     

Structure and spectroscopic aspects of water‐halide ion clusters: A study based on a conjunction of stochastic and quantum chemical methods

In this article, we propose a stochastic search based method, namely genetic algorithm in conjunction with density functional theory to evaluate structures of water‐halide microclusters, with the halide ion being Cl^?, Br^?, and I^?. Once the structures are established, we evaluate the infrared spectroscopic modes, vertical detachment energies and natural population analysis based charges. We compare our results with available experimental and theoretical results. © 2012 Wiley Periodicals, Inc.     

Lifetime measurements in Pt and the shape coexistence picture

Lifetimes for levels in the yrast band of ¹⁸⁴Pt have been measured up to spin 16⁺ using the recoil distance technique. The B(E2) values exhibit a marked increase in going from spin 2 to 10, consistent with a proposal that two bands of different deformations are mixing at low spin. This provides further support for shape coexistence occuring at low excitation energies in this region.     

Oncologic applications of biophotonics

The understanding of various intrinsic photobiophysical processes has prompted researchers to develop different types of biodevices for health care. In the recent past, because of extensive contributions from various groups in the field of biophotonics, several important biomedical applications are emerging in the fields of both diagnostics and therapy. In this brief review, we discuss a few specific applications related to early detection and characterization of premalignant and malignant lesions using optical spectroscopic techniques, namely, fluorescence and Raman, and in management of cancer, the emerging scene of photodynamic therapy.