Australian Synchrotron User Meeting 2014

Synchrotron users and experts from Australia, New Zealand, and further afield congregated in November for the Australian Synchrotron User Meeting 2014. Around 200 members of the synchrotron community attended the highly anticipated meeting held, in conjunction with the New User Symposium, at the Australian Synchrotron's National Centre for Synchrotron Science. Early career researchers played a prominent role at the meeting. Their achievements highlighted the promising capabilities of the region's next generation of synchrotron scientists.     

Nickel‐Catalyzed Barton Decarboxylation and Giese Reactions: A Practical Take on Classic Transforms

Two named reactions of fundamental importance and paramount utility in organic synthesis have been reinvestigated, the Barton decarboxylation and Giese radical conjugate addition. N ‐hydroxyphthalimide (NHPI) based redox‐active esters were found to be convenient starting materials for simple, thermal, Ni‐catalyzed radical formation and subsequent trapping with either a hydrogen atom source (PhSiH₃) or an electron‐deficient olefin. These reactions feature operational simplicity, inexpensive reagents, and enhanced scope as evidenced by examples in the realm of peptide chemistry.     

Early Abortion and Personal Ontology

We are beings endowed with “personal capacities”—the capacity for reason, for a concept of self, perhaps more. Among ontologically salient views about what else we are, I focus on the “Big Three.” According to animalism, we are animals that have psychological properties only contingently. According to psychologistic materialism, we are material beings; according to substance dualism, we are either immaterial beings or composites of immaterial and material ones; but according to both psychologistic materialism and substance dualism, we essentially have some psychological properties. I argue that—contrary to what has been argued and is natural to think—none of the Big Three yields different assignments of moral status to early fetuses from any of the others, and consequently the moral status of early abortion doesn’t depend on which (if any) of these views of personal ontology is correct.     

Phase Transfer Catalysis: Improved Synthesis of Ketones from β-Keto Esters in an Aoueous Medium

β-Keto esters can be easily decarbethoxylated to yield ketones in dilute aqueous potassium hydroxide that contains 0.1% hexadecyltrimethylammonium bromide in 45 minutes at 80°C; yields exceed 75% and work-up requires only a single step.     

Gibbs ensemble simulation of nematic-isotropic coexistence in a liquid crystal mixture

The results are presented of Gibbs ensemble Monte Carlo (GEMC) simulations examining the nematic–isotropic (N–I) coexistence envelope of a liquid crystal mixture. The system studied is a 50:50 mixture of 1000 generalized Gay–Berne particles with axial ratios 2.0:1 and 2.5:1. For this system, stable N–I coexistence is observed over run lengths in excess of 5 x 10⁵ GEMC sweeps. There is unambiguous evidence of fractionation, the mole fractions of long particles in the coexisting phases typically differing by 11%. The measured coexistence envelope does not conform to the lens shape predicted by Onsager theory; qualitative finite size arguments are given in explanation of this distortion.     

DNA purification using dynamic solid-phase extraction on a rotationally-driven polyethylene-terephthalate microdevice

We report the development of a disposable polyester toner centrifugal device for semi-automated, dynamic solid phase DNA extraction (dSPE) from whole blood samples. The integration of a novel adhesive and hydrophobic valving with a simple and low cost microfabrication method allowed for sequential addition of reagents without the need for external equipment for fluid flow control. The spin-dSPE method yielded an average extraction efficiency of ∼45% from 0.6 μL of whole blood. The device performed single sample extractions or accommodate up to four samples for simultaneous DNA extraction, with PCR-readiness DNA confirmed by effective amplification of a β-globin gene. The purity of the DNA was challenged by a multiplex amplification with 16 targeted amplification sites. Successful multiplexed amplification could routinely be obtained using the purified DNA collected post an on-chip extraction, with the results comparable to those obtained with commercial DNA extraction methods. This proof-of-principle work represents a significant step towards a fully-automated low cost DNA extraction device.     

Exploring the Effect of Ligand Structural Isomerism in Langmuir–Blodgett Films of Chiral Luminescent EuIII Self‐Assemblies

Here we have investigated the influence of the antenna group position on both the formation of chiral amphiphilic Eu^III‐based self‐assemblies in CH₃CN solution and, on the ability to form monolayers on the surface of quartz substrates using the Langmuir–Blodgett technique, by changing from the 1‐naphthyl ( 2(R) , 2(S) ) to the 2‐naphthyl ( 1(R) , 1(S) ) position. The evaluation of binding constants of the self‐ assemblies in CH₃CN solution was achieved using conventional techniques such as UV/Visible and luminescence spectroscopies along with more specific circular dichroism (CD) spectroscopy. The binding constants obtained for EuL , EuL₂ and EuL₃ species in the case of 2‐naphthyl derivatives were comparable to those obtained for 1‐naphthyl derivatives. The analysis of the changes in the CD spectra of 1(R) and 1(S) upon addition of Eu^III not only allowed us to evaluate the values of the binding constants but the resulting recalculated spectra may also be used as fingerprints for assignment of the chiral self‐assembly species formed in solution. The obtained monolayers were predominantly formed from EuL₃ (≈85 %) with the minor species present in ≈15 % EuL₂ .     

The infra-red spectra of silyl fluoride and silyl fluoride-d 3

Infra-red spectra have been recorded for silyl fluoride and silyl fluoride-d ₃ at a resolution of circa 0·3 cm^-1. Rotational structure has been observed for parallel fundamentals in both molecules, and for all perpendicular fundamentals. In both SiH₃F and SiD₃F the A ₁ and E species deformation modes interact strongly via a Coriolis perturbation; this has been analysed, and the band origin of v ₅ for SiH₃F is reassigned. A hybrid-orbital force field based on the experimental data is also reported.     

Plate-based diversity subset screening: an efficient paradigm for high throughput screening of a large screening file

The screening files of many large companies, including Pfizer, have grown considerably due to internal chemistry efforts, company mergers and acquisitions, external contracted synthesis, or compound purchase schemes. In order to screen the targets of interest in a cost-effective fashion, we devised an easy-to-assemble, plate-based diversity subset (PBDS) that represents almost the entire computed chemical space of the screening file whilst comprising only a fraction of the plates in the collection. In order to create this file, we developed new design principles for the quality assessment of screening plates: the Rule of 40 (Ro40) and a plate selection process that insured excellent coverage of both library chemistry and legacy chemistry space. This paper describes the rationale, design, construction, and performance of the PBDS, that has evolved into the standard paradigm for singleton (one compound per well) high-throughput screening in Pfizer since its introduction in 2006.