Ground and valence-excited states of SF: a multireference configuration interaction with single and double excitations+Q study

Ab initio calculations on the ground and valence-excited states of the sulfur monofluoride radical have been performed using entirely uncontracted all-electron augmented correlation consistent polarized valence quintuple zeta basis sets and the internally contracted multireference configuration interaction with single and double excitations method and Davidson correction (+Q). Potential-energy curves of all valence electronic states and the spectroscopic constants of several bound states are fitted. It is the first time that the entire 27-omega states generated from the 12 valence lambda-S states which come from the S(3P(g)) and F(2P(u)) atomic states of SF radical have been studied theoretically. The effects of spin-orbit coupling and the avoided crossing rule between omega states of the same symmetry are analyzed. The calculated results reproduce well the available experimental values and predict the properties of several bound excited states that have never been observed in experiment. The transition properties of the dipole-allowed transitions from bound excited states to the ground state are predicted for the first time, including the transition dipole moments, the Franck-Condon factors, and the radiative lifetimes.     

Interpretation of the vibrational spectra of matrix-isolated uracil from scaled ab initio quantum mechanical force fields

The vibrational spectrum of uracil trapped in an argon matrix has been interpreted based on ab initio Hartree–Fock SCF calculations with a split-valence 4?21 basis set. The directly computed theoretical general valence force field was scaled with empirical scale factors in order to correct for the systematic errors originating in the limitation of the theoretical model. Scale factors transferred from related molecules provided a priori prediction of fundamental frequencies and intensities, permitting several corrections to be proposed for earlier assignments. Using the observed spectrum with the few altered assignments, a new set of scale factors was optimized to give the best force field available from combined consideration of the experimental and the theoretical data. For unknown reasons, the out-of-plane force field predicted a spectrum agreeing slightly less well with experiment than did the in-plane force field. However, the overall agreement between theory and experiment provided additional support for the assumptions involved in the method. The computed force fields were compared with others available from previous work. The comparison demonstrated the importance of expanding the energy surface around the true energy minimum and of using a proper scaling procedure. Previous scaled CNDO /2 calculations were found to be surprisingly good despite the large corrections required and the fact that they were made at an incorrect geometry.     

Nonempirical quantum chemical calculation for nitramide,its chloro- and methyl-substituted derivatives. II. Structures and energies of transition states for internal rotation and inversion of the amino group

For five N-nitramines (H₂NNO₂, MeNHNO₂, ClNHNO₂, MeNClNO₂, Me₂NNO₂) using the program GAUSSIAN-90 we have carried out quantum chemical calculations by the restricted Hartree—Fock method, taking into account electron correlation by second-order Møller—Plesset perturbation theory in a standard 6–31G^* basis. In this paper, we consider the transition states for inversion of the amine nitrogen atom and rotation about the NN bond. We have obtained data on the changes in the geometric parameters during inversion and rotation. The changes in the NN bond length are especially significant they increase by 0.06–0.08 Å in the transition states for internal rotation compared with the equilibrium forms. We have calculated the barriers to inversion and internal rotation, the height of which strongly depends on the electronegativity of the substituents on the amine nitrogen atom. Estimates of the barriers to inversion lie within the range 0.4–6.0 kcal/mole while estimates of the barriers to rotation lie within the range 6–13 kcal/mole, which are 1.5–2 times lower than in amides and N-nitrosoamines.Moscow State University. Translated from Zhurnal Strukturnoi Khimii, Vol. 34, No. 1, pp. 12–19, January–February, 1993.     

A Novel Electron-Conformational Approach to Molecular Modeling for QSAR by Identification of Pharmacophore and Anti-Pharmacophore Shielding

Abstract

A novel method of pharmacophore identification and activity prediction in structure-activity (structure-property) relationships is worked out as an essential extension and improvement of previous publications. In this method each conformation of the molecular systems in the training set of the SAR problem is presented by both electronic structure and geometry parameters arranged in a matrix form. Multiple comparisons of these matrices for the active and inactive compounds allows one to separate a smaller number of matrix elements that are common for all the active compounds and are not present in the same arrangement in the inactive ones. This submatrix of activity represents the pharmacophore (Pha).

By introducing the Anti-Pharmacophore Shielding (APS) defined as molecular groups and competing charges outside the Pha that hinder the proper docking of the Pha with the bioreceptor, the procedure of Pha identification is essentially reduced to the treatment of a smaller number of simplest in structure most active and inactive compounds. A simple empirical scheme is suggested to estimate the APS numerically, while the contributions of different conformations of the same compound are taken into account by means of Boltzmann distribution. This enables us to make approximate quantitative predictions of activities.

In application to rice blast activity we reached an approximately 100% (within experimental error) prediction probability of the activity qualitatively (yes, no), and with r ² = 70% quantitatively.     

The computed force constants and vibrational spectra of cubane

The geometry, complete harmonic force field, and dipole moment derivatives of cubane, C₈H₈, have been calculated at the Hartree-Fock level using a 4–21 Gaussian basis set. The infrared and Raman spectra of cubane and four deuterated derivatives were calculated and compared with previously observed spectra. A set of five scale factors for the calculated force constants was then derived by least-squares fitting of the fundamental vibrational frequencies calculated from the scaled force field to the frequencies obtained by direct experimental measurement. The resulting scaled quantum-mechanical (SQM) force field, containing 73 unique elements, is believed to give an accurate representation of the harmonic vibrational potential of cubane. In most cases, the spectral assignments previously made from purely empirical considerations were confirmed, but a few corrections are proposed. The only major alteration is for an A_2u mode revised to appear at 1030 cm^?1 in the undeuterated molecule. Coriolis constants and approximate infrared intensities are also calculated.     

Experimental and ab Initio Equilibrium Structure and Harmonic Force Field of 1,2,5-Oxadiazole

The equilibrium structure of 1,2,5-oxadiazole has been calculated ab initio at the CCSD(T) level using a polarized valence quadruple zeta basis set. The harmonic force field has also been calculated at the MP2/cc-pVTZ, B3LYP/6-311++G(3df, 2pd), and B3LYP/cc-pVQZ levels. These force fields have been subsequently scaled and further refined by fitting them to the experimental values of the vibrational fundamentals of three isotopomers and the centrifugal distortion constants of the parent molecule. The specific refinement of those scaled force constants particularly sensitive to the experimental data set was decisive for obtaining a more reliable harmonic potential. The resulting force fields are presented and used, together with the ground state rotational constants, to calculate an r(z) structure. The experimental r(0), r(s), and r(m) structures have also been determined. The different results have been compared and it is concluded that the ab initio structure is a good approximation of the equilibrium structure. It is also shown that the magnetic correction is not negligible, particularly for the inertial defect. Another interesting conclusion is that the anharmonicity of the C-H stretching might be unusually small. Copyright 2001 Academic Press.     

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Ohne Zusammenfassung     

Structural evidence of anomeric effects in the anesthetic isoflurane

The conformational and structural properties of the inhalational anesthetic isoflurane (1-chloro-2,2,2-trifluoroethyl difluoromethyl ether) have been probed in a supersonic jet expansion using Fourier-transform microwave (FT-MW) spectroscopy. Two conformers of the isolated molecule were identified from the rotational spectrum of the parent and several (37)Cl and (13)C isotopologues detected in natural abundance. The two most stable structures of isoflurane are characterized by an anti carbon skeleton (τ(C(1)-C(2)-O-C(3)) = 137.8(11)° or 167.4(19)°), differing in the trans (AT) or gauche (AG) orientation of the difluoromethyl group. The conformational abundances in the jet were estimated from relative intensity measurements as (AT)/(AG) ≈ 3:1. The structural preferences of the molecule have been rationalized with supporting ab initio calculations and natural-bond-orbital (NBO) analysis, which suggest that the molecule is stabilized by hyperconjugative effects. The NBO analysis of donor-acceptor (LP → σ*) interactions showed that these stereoelectronic effects decrease from the AT to AG conformations, so the conformational preferences can be accounted for in terms of the generalized anomeric effect.