Increasing protein stability by engineering the n → π* interaction at the β-turn

Abundant n → π* interactions between adjacent backbone carbonyl groups, identified by statistical analysis of protein structures, are predicted to play an important role in dictating the structure of proteins. However, experimentally testing the prediction in proteins has been challenging due to the weak nature of this interaction. By amplifying the strength of the n → π* interaction via amino acid substitution and thioamide incorporation at a solvent exposed β-turn within the GB1 proteins and Pin 1 WW domain, we demonstrate that an n → π* interaction increases the structural stability of proteins by restricting the ϕ torsion angle. Our results also suggest that amino acid side-chain identity and its rotameric conformation play an important and decisive role in dictating the strength of an n → π* interaction.

Amino acid residues adopt a right-handed α-helical conformation with increasing strength of the n → π* interaction. We also demonstrate a direct consequence of n → π* interactions on enhancing the structural stability of proteins.     

Regioselective cleavage of the bis-benzylidene acetal of d-mannitol under oxidative and reductive conditions: a new approach to C2-symmetric chiral ligands

A highly regioselective oxidative cleavage of 1,3:4,6-di-O-benzylidene-d-mannitol was carried out using NBS and the resultant product was readily converted to the C₂-symmetric chiral ligand, (R,R)-3,4-dihydroxy-1,5-hexadiene. On the other hand, reductive cleavage of 1,3:4,6-di-O-benzylidene-d-mannitol was achieved in a highly regioselective manner using BF₃·OEt₂ and Et₃SiH to give a highly functionalized benzyl ether, which was converted to a synthetically useful C₂-symmetric bis-amino alcohol derivative.     

Gels dried under supercritical and ambient conditions: a comparative study and their subsequent conversion to silica–carbon composite aerogels

In present work, we have prepared gels with various compositions of methyltrimethoxysilane—3-(2,3-epoxypropoxy) propyltrimethoxysilane (MTMS-GPTMS) using a two-step acid base sol–gel process. To make a comparative study between the two common drying routes, we prepared gels under supercritical and also under ambient conditions. The density of the supercritically dried hybrid aerogels lies between 0.18 and 0.31 gcm^?3, while the density of the ambient dried ones ranges between 0.35 and 0.42 gcm^?3. The surface area of MTMS-0.25 GPTMS aerogel dried under supercritical conditions, has been found to be 464 m² g^?1 with a pore volume and average pore diameter of 1.24 cm³ g^?1 and 11 nm respectively. The same composition dried under ambient conditions is found to have similar properties i.e. a BET surface area of 439 m² g^?1, pore volume of 1.22 cm³ g^?1 and average pore diameter of 11 nm. The aerogels were later pyrolyzed yielding silica/carbon composite aerogels. The pyrolized aerogels possessed a surface area as high as 207 m² g^?1 with a total pore volume of 0.98 cm³ g^?1. The pyrolysed aerogels were also calcined to yield carbon free materials.     

Scalable bottom‐up assembly of suspended carbon nanotube and graphene devices by dielectrophoresis

Bottom‐up assembly by dielectrophoresis (DEP) has emerged in recent years as a viable alternative to conventional top–down fabrication of electronic devices from nanomaterials, particularly carbon nanotubes and graphene. Here, we demonstrate how this technique can be extended to fabricate devices containing carbon nanotubes and graphene suspended between two electrodes over a back‐gate electrode. The suspended device geometry is critical for the development of nano‐electromechanical devices and to extract maximum performance out of electronic and optoelectronic devices. This technique allows for parallel assembly of devices over large scale. (© 2015 WILEY‐VCH Verlag GmbH &Co. KGaA, Weinheim)     

Stereoselective synthesis of peracetylated (−)-gloeosporiol via acid catalysed intramolecular etherification

A simple and an efficient strategy have been developed for the stereoselective synthesis of peracetylated (?)-gloeosporiol by acid catalysed cyclisation from the commercially available starting materials.     

HOW REYE'S CONFIGURATION HELPS IN PROVING THE BELL–KOCHEN–SPECKER THEOREM: A CURIOUS GEOMETRICAL TALE

It is shown that the 24 quantum states or rays used by Peres (J. Phys. A 24, 174-8 (1991)) to give a proof of the Bell–Kochen–Specker (BKS) theorem have a close connection with Reye's configuration, a system of twelve points and sixteen lines known to projective geometers for over a century. The interest of this observation stems from the fact that it provides a ready explanation for many of the regularities exhibited by the Peres rays and also permits a systematic construction of all possible non-coloring proofs of the BKS theorem based on these rays. An elementary exposition of the connection between the Peres rays and Reye's configuration is given, following which its applications to the BKS theorem are discussed.     

DFT study of Pt adsorption on low index SrTiO3 surfaces: SrTiO3(1 0 0), SrTiO3(1 1 1) and SrTiO3(1 1 0)

Density Functional Theory has been used to determine the energetically preferred structures of submonolayer, monolayer, and multilayer Pt films on both ideal terminations of SrTiO₃(1 0 0), SrTiO₃(1 1 1), and SrTiO₃(1 1 0). The strength of the resulting metal/metal oxide interfaces was characterized by the adsorption energy of the film and the film’s work of separation. The two polar surfaces, SrTiO₃(1 1 1) and SrTiO₃(1 1 0), form significantly stronger interfaces than the non-polar SrTiO₃(1 0 0) surface. Approximate criteria were applied to predict the growth mode of Pt on each surface.     

Propane σ‐Complexes on PdO(101): Spectroscopic Evidence of the Selective Coordination and Activation of Primary C?H Bonds

Achieving selective C H bond cleavage is critical for developing catalytic processes that transform small alkanes to value‐added products. The present study clarifies the molecular‐level origin for an exceptionally strong preference for propane to dissociate on the crystalline PdO(101) surface via primary C H bond cleavage. Using reflection absorption infrared spectroscopy (RAIRS) and density functional theory (DFT) calculations, we show that adsorbed propane σ‐complexes preferentially adopt geometries on PdO(101) in which only primary C H bonds datively interact with the surface Pd atoms at low propane coverages and are thus activated under typical catalytic reaction conditions. We show that a propane molecule achieves maximum stability on PdO(101) by adopting a bidentate geometry in which a H Pd dative bond forms at each CH₃ group. These results demonstrate that structural registry between the molecule and surface can strongly influence the selectivity of a metal oxide surface in activating alkane C H bonds.     

High selectivity for primary C-H bond cleavage of propane σ-complexes on the PdO(101) surface

We investigated regioselectivity in the initial C-H bond activation of propane σ-complexes on the PdO(101) surface using temperature programmed reaction spectroscopy (TPRS) experiments. We observe a significant kinetic isotope effect (KIE) in the initial C-H(D) bond cleavage of propane on PdO(101) such that the dissociation yield of C(3)H(8) is 2.7 times higher than that of C(3)D(8) at temperatures between 150 and 200 K. Measurements of the reactivity of (CH(3))(2)CD(2) and (CD(3))(2)CH(2) show that deuteration of the methyl groups is primarily responsible for the lower reactivity of C(3)D(8) relative to C(3)H(8), and thus that 1° C-H bond cleavage is the preferred pathway for propane activation on PdO(101). By analyzing the rate data within the context of a kinetic model for precursor-mediated dissociation, we estimate that 90% of the propane σ-complexes which dissociate on PdO(101) during TPRS do so by 1° C-H bond cleavage.