Studies on the metal-nuclotide (Co-5′IMP,Co-5′GMP) interaction via mössbauer emission spectroscopy and magnetic susceptibility measurements

By means of⁵⁷Co Mössbauer emission spectroscopy and magnetic susceptibility measurements, the local symmetries and electronic structure of the Co(II) ions in the Co-5IMO and Co-5GMP complexes in the hydrated and dehydrated forms have been determined.     

Mössbauer studies on one-dimensional iron phthalocyanines

Summary Magnetic moments and⁵⁷Fe Mössbauer spectra at room temperature and at liquid nitrogen temperature of polynuclear ligand-bridged iron phthalocyanines, FePcL (L = pyrazine and 4,4-bipyridyl), are reported. The experimental data are in agreement with a pseudo-octahedral environment around the iron(II) cation. Partially oxidized derivatives, FePc(pz)I_0.26 and FePc(bipy)I_1.06 have been synthesized and their⁵⁷Fe Mössbauer spectra and magnetic moments within the same temperature range obtained. Oxidation is shown to be metal centred and the iodine is found to be in I^– form for FePc(pz)_0.26 and as both I^– and I ₃ ^– species for FePc(bipy)I_1.06. While the magnetic moment of FePc(pz) increases upon oxidation, the opposite occurs for FePc(bipy).     

Magnetic properties of Co nanoparticles in zirconia matrix

Granular films composed of nanometric Co particles embedded in an insulating ZrO₂ matrix were prepared by pulsed laser deposition in a wide range of Co volume concentrations (0.06<x_v<0.42). High-resolution electron microscopy (HREM) shows very sharp interfaces between the crystalline particles and the amorphous matrix, with no evidence of intermixing. The mean particles size and width of the distribution determined by fitting the low-field magnetic susceptibility and magnetization curves in the paramagnetic regime to a distribution of Langevin functions are in agreement with the parameters extracted from direct TEM observations. Ferromagnetic correlations between Co particles are evident in the field-cooled state when increasing Co concentration. The effective anisotropy constant estimated from magnetic measurements is about two orders of magnitude larger than the bulk value, and decreases as particle size increases.     

Exchange interactions in BaFe12O19

In the scope of the mean field approximation the nine nearest neighbour exchange interactions existing among the ferric ions in BaFe₁₂O₁₉ hexagonal ferrite have been determined from the experimental sublattice magnetizations. It is shown that these exchange interactions are well explained by means of the superexchange theory. It is also concluded that some direct exchange interaction does exist among the octahedral 4f _VI ions. The calculated magnetization, paramagnetic susceptibility, and Curie temperature are in good agreement with the corresponding experimental values. The stability of the collinear Gorter-type magnetic structure of BaFe₁₂O₁₉ is discussed as well.     

HTMoL: full-stack solution for remote access,visualization, and analysis of molecular dynamics trajectory data

Research on biology has seen significant advances with the use of molecular dynamics (MD) simulations. The MD methodology enables explanation and discovery of molecular mechanisms in a wide range of natural processes and biological systems. The need to readily share the ever-increasing amount of MD data has been hindered by the lack of specialized bioinformatic tools. The difficulty lies in the efficient management of the data, i.e., in sending and processing 3D information for its visualization. In this work, we present HTMoL, a plug-in-free, secure GPU-accelerated web application specifically designed to stream and visualize MD trajectory data on a web browser. Now, individual research labs can publish MD data on the Internet, or use HTMoL to profoundly improve scientific reports by including supplemental MD data in a journal publication. HTMoL can also be used as a visualization interface to access MD trajectories generated on a high-performance computer center directly. Furthermore, the HTMoL architecture can be leveraged with educational efforts to improve learning in the fields of biology, chemistry, and physics.     

Laser flash photolysis study of the photocatalytic step of the photo-fenton reaction in saline solution

The photo-Fenton reaction (Fe2+/Fe3+, H2O2, UV light) is strongly inhibited by high concentrations of added chloride ion. In this work, the effect of added chloride ion on the photocatalytic step that converts Fe(III) back to Fe(II) is studied by nanosecond laser flash photolysis over a wide range of pH (1.0-3.3) and concentrations of Fe(III) (0.1-1.0 mM) and chloride ion (0.05-0.75 M). An explicit mechanistic model based on the preferential formation of the less-reactive Cl2*- radical anion via two routes (competitive photolysis of the iron(III)-chloride complex to chlorine atoms instead of the desired hydroxyl radical and pH-dependent scavenging of the hydroxyl radical by chloride ion) is proposed. This model, which fits the laser flash photolysis data for the production and decay of Cl2*- over the entire range of conditions investigated, suggests that inhibition of the photocatalytic step of the photo-Fenton process in the presence of chloride ion can be circumvented by maintaining the pH of the medium at or slightly above 3.0 throughout the reaction.     

Synthesis,spectroscopic and magnetic characterization of some iron(III)-nucleotide compounds

Summary Magnetic moments and⁵⁷Fe M?ssbauer spectra at various temperatures of polycrystalline samples of some Fe^III-nucleotide compounds are described and have been characterized by u.v.-visible and fluorescence spectroscopy. Conclusions regarding the binding of iron(III) to nucleic acids are discussed.     

MPI+X: task-based parallelisation and dynamic load balance of finite element assembly

The main computing phases of numerical methods for solving partial differential equations are the algebraic system assembly and the iterative solver. This work focuses on the first task, in the context of a hybrid MPI+X paradigm. The matrix assembly consists of a loop over the elements, faces, edges or nodes of the MPI partitions to compute element matrices and vectors and then of their assemblies. In a MPI+X hybrid parallelism context, X has consisted traditionally of loop parallelism using OpenMP, with different techniques to avoid the race condition, but presenting efficiency or implementation drawbacks. We propose an alternative, based on task parallelism using some extensions to the OpenMP programming model. In addition, dynamic load balance will be applied, especially efficient in the presence of hybrid meshes. This paper presents the proposed methodology, its implementation and its validation through the solution of large computational mechanics problems up to 16k cores.     

Energy barrier distributions in magnetic systems from the Tln(t/τ0) scaling

A method based in the Tln(t/τ₀) scaling is proposed to obtain the energy barrier distribution of a randomly oriented assembly of magnetic entities. It essentially consists on performing the logarithmic time derivative of the master relaxation curve. The method has been applied to two small particle systems and the obtained distributions are in good agreement with the ones used to fit the master curves to the magnetization decay of a system following the Arrhenius law. The effect of the specific shape of the distribution functions on the low temperature behaviour of the relaxation rate and the possibility to erroneously attribute this behaviour to non-thermal processes is also discussed.