Tunisian traceability system

The concept of metrology first appeared in Tunisia towards 1909. At the end of the 1990s, bodies for evaluating conformity of measurement at different levels have been instituted to meet calibration and testing needs of the national industry. These bodies were divided into three categories: Class A where we find mainly the Central Laboratory for Analysis and Testing LCAE and the National Defence Laboratory DEFNAT; these two laboratories are in charge of the technological upgrading of the other bodies of Class B which, in turn, would transfer their knowledge to the industries, the latter constituting Class C. Nowadays, the accreditation of Tunisian laboratories at the international level by recognized reference foreign bodies and participation in the European proficiency network enabled the national laboratories of Tunisia to establish the degree of equivalence between their measurement results and those of other foreign laboratories.     

Excitonic effects in two-dimensional vibrational spectra of liquid formamide

The linear and two-dimensional infrared (2DIR) responses of the amide I vibrational mode in liquid formamide are investigated experimentally and theoretically using molecular dynamics simulations. The recent method based on the numerical integration of the Schr?dinger equation is employed to calculate the 2DIR spectra. Special attention is devoted to the interplay of the structural dynamics and the excitonic nature of the amide I modes in determining the optical response of the studied system. In particular, combining experimental data, simulated spectra and analysis of the simulated atomic trajectory in terms of a transition dipole coupling model, we provide a convincing explanation of the peculiar features of the 2DIR spectra, which show a substantial increase of the antidiagonal bandwidth with increasing frequency. We point out that, at variance with liquid water, the 2DIR spectral profile of formamide is determined more by the excitonic nature of the vibrational states than by the fast structural dynamics responsible for the frequency fluctuations.     

A novel carbon/chitosan paste electrode for electrochemical detection of normetanephrine in the urine

Normetanephrine is a marker for pheochromocytoma, a rare catecholamine-secreting and neuroendocrine tumor, that arises from sympathetic and parasympathetic paraganglia. In this work, a novel carbon/chitosan electrode paste was used for sensitive voltammetric determination of normetanephrine and dopamine in the presence of ascorbic acid and uric acid. The modified electrode has shown an increase in the effective area of up to 68%, well-separated oxidation peaks, and an excellent electrocatalytic activity. The electrochemical response characteristics were investigated by cyclic and differential pulse voltammetry. Interestingly, high sensitivity and selectivity in the linear range of normetanephrine, dopamine, ascorbic acid, and uric acid concentrations were observed. The present method was applied in the urine sample and satisfactory results were obtained showing that this electrode is very suitable in pharmaceutical and clinical preparations.     

Free volume from molecular dynamics simulations and its relationships to the positron annihilation lifetime spectroscopy

The free volume micro-structural properties of propylene glycol obtained by means of molecular dynamics simulations have been investigated and compared with the experimental data from positron annihilation lifetime spectroscopy (PALS). The results are also compared to those recently obtained on glycerol. The bulk microstructures of the samples have been analyzed in the temperature range 100–350 K with a probe-based procedure for exploring the free volume cavities of the microstructures. The basic free volume property, i.e., mean cavity volume, is compared with the hole volume data from PALS. A comparison between calculated and experimental data suggests the existence of a threshold volume for the smallest cavity detectable by PALS, which may be ascribed to fast local motions of the matrix constituents. At high temperatures the cavity analysis reveals the formation of an infinite cavity, i.e., percolation phenomenon. The onset temperatures of the percolation process in propylene glycol and glycerol are found to be close to the characteristic PALS temperature \(T^{\rm L}_{\rm b2}\) , where a pronounced change in the PALS response occurs, as well as to the characteristic dynamic Schönhals temperature \(T^{\rm SCH}_{\rm B}\) , and Stickel’s temperature \(T^{\rm ST}_{\rm B}\) , marking a dramatic change in the primary α properties.     

Evaluation of endothelial cell adhesion onto different protein/gold electrodes by EIS

To study cell attachment to biomaterials, several proteins such as fibronectin, collagen IV, heparin, immunoglobulin G, and albumin have been deposited onto polystyrene adsorbed on a self-assembled monolayer (silane or thiol) on glass or gold, respectively. The different steps of this multilayer assembly have been characterized by electrochemical impedance spectroscopy (EIS). These data are compared to those of adhesion rate, viability percentage, and cytoskeleton labeling for a better understanding of the cell adhesion process to each protein. All the proteins are endothelial cell adhering biomolecules but not with the same features. A linear relationship has been established between adhesion rate and resistance of the endothelial cell/protein interface for all negatively charged proteins.     

Crooks equation for steered molecular dynamics using a Nosé-Hoover thermostat

The Crooks equation [Eq. (10) in J. Stat. Phys. 90, 1481 (1998)], originally derived for microscopically reversible Markovian systems, relates the work done on a system during an irreversible transformation to the free energy difference between the final and the initial state of the transformation. In the present work we provide a theoretical proof of the Crooks equation in the context of constant volume, constant temperature steered molecular dynamics simulations of systems thermostated by means of the Nosé-Hoover method (and its variant using a chain of thermostats). As a numerical test we use the folding and unfolding processes of decaalanine in vacuo at finite temperature. We show that the distribution of the irreversible work for the folding process is markedly non-Gaussian thereby implying, according to Crooks equation, that also the work distribution of the unfolding process must be inherently non-Gaussian. The clearly asymmetric behavior of the forward and backward irreversible work distributions is a signature of a non-Markovian regime for the folding/unfolding of decaalanine.     

Resolving capacity of infrared–visible sum frequency generation microscopy to address discrete structural realizations of a protein at interface

In this article, we address theory and explore possible implications of infrared–visible sum frequency generation microscopy imaging for structural and orientational analysis of a single polypeptide at a phospholipid membrane interface. The suggested structural analysis is based on detection of amplitude (intensity) images specific to a single protein under a given orientation, rather than on detection of spectral dispersions of responses from orientationally averaged ensembles. To establish the principle and model implications, we perform quantum‐mechanical calculations of nonlinear responses of a pentadecapeptide helix and a penta‐pentadecapeptide helical dimer, the secondary structure of which is identical to that of gramicidin. Using properties of calculated amide I modes, we account polarization settings for the mixing fields, under the considered experimental geometry, to extract images specific to χ_YYY, χ_XYY, χ_XYX, χ_YZY, and χ_XYZ nonlinearities. If extracted in dependence on the angle of rotation of the sample holder, the reconstructed images provide information, which may allow identifying structure and orientation of the proteins under study. Hence, the approach may help addressing catalytic properties of proteins, whose role is to attune chemical permeability of membranes they associate with. Copyright © 2016 John Wiley & Sons, Ltd.