The synthesis of 6-trifluoroethyl-l-lysine: a method to introduce functionality at C-6 of l-lysine

Described is a method of introducing trifluoroalkyl groups at C-6 of lysine. This chemistry has the potential to introduce a variety of functionality at C-6 of lysine.     

Transport of surface-modified iron nanoparticle in porous media and application to arsenic(III) remediation

The surface-modified iron nanoparticles (S-INP) were synthesized, characterized and tested for the remediation of arsenite (As(III)), a well known toxic groundwater contaminant of concern. The S-INP material was fully dispersed in the aqueous phase with a particle size distribution of 2–10 nm estimated from high-resolution transmission electron microscopy (HR-TEM). X-ray photoelectron spectroscopy (XPS) revealed that an Fe(III) oxide surface film was present on S-INP in addition to the bulk zero-valent Fe⁰ oxidation state. Transport of S-INP through porous media packed in 10 cm length column showed particle breakthroughs of 22.1, 47.4 and 60 pore volumes in glass beads, unbaked sand, and baked sand, respectively. Un-modified INP was immobile and aggregated on porous media surfaces in the column inlet area. Results using S-INP pretreated 10 cm sand-packed columns containing ∼2 g of S-INP showed that 100 % of As(III) was removed from influent solutions (flow rate 1.8 mL min⁻¹) containing 0.2, 0.5 and 1.0 mg L⁻¹ As(III) for 9, 7 and 4 days providing 23.3, 20.7 and 10.4 L of arsenic free water, respectively. In addition, it was found that 100% of As(III) in 0.5 mg/L solution (flow rate 1.8 mL min⁻¹) was removed by S-INP pretreated 50 cm sand packed column containing 12 g of S-INP for more than 2.5 months providing 194.4 L of arsenic free water. Field emission scanning electron microscopy (FE-SEM) showed S-INP had transformed to elongated, rod-like shaped corrosion product particles after reaction with As(III) in the presence of sand. These results suggest that S-INP has great potential to be used as a mobile, injectable reactive material for in-situ sandy groundwater aquifer treatment of As(III).     

The determination of manganese by electrothermal atomic absorption spectrometry with a graphite furnace at constant temperature

Many of the interferences reported earlier for the determination of manganese in a graphite furnace were not found when a modern graphite furnace was used. At high levels of chloride matrix, an interference which was observed in the modern furnace was reduced when manganese was determined under constant temperature conditions. In this work, the sample was introduced on a tungsten wire after the graphite furnace had reached a constant, preset temperature. Drying and ashing were accomplished outside the atomization furnace, reducing contamination from matrix materials.     

An NMR study of the rotational barriers in cobalt-stabilized carbocations: X-ray crystal structures of (η-C4Ph4)Co-(η-C5H4R), where R is CH3CO, CHO, CH(Bu)OH

Treatment of the aldehyde (η⁴-C₄Ph₄)Co(η⁵-C₅H₄-CHO) (4b) with tert-butyllithium or phenyllithium yields the secondary alcohols (η⁴-C₄Ph₄)Co(η⁵-C₅H₄-CH(R)OH), where R=tert-butyl (5) or phenyl (6). Protonation of 5 and 6 at −80 °C furnishes the deep purple, cobalt-stabilized cations, 7 and 8, respectively, both of which exhibit restricted rotation about the external C₅H₄-CHR⁺ linkage on the NMR time-scale. These data indicate a minimum value for the barrier to rotation of 15 kcal mol⁻¹, but it is certainly much higher, indicating a considerable degree of C-C double bond character. X-ray crystal structures of 4b, 5 and also of the ketone (η⁴-C₄Ph₄)Co(η⁵-C₅H₄-C(O)CH₃ (4a) are reported. The secondary alcohol 5 exhibits disorder in the solid state because of the presence of diastereomers as a consequence of the stereogenic center at the α-carbon and the clockwise or anticlockwise propeller orientations of the tetraphenylcyclobutadiene ligand.     

Is a small number of charge neutralizations sufficient to bend nucleosome core DNA onto its superhelical ramp?

X-ray diffraction structures of the nucleosome core particle along with a variety of experiments are consistent with the idea that an important source of the free energy holding DNA to the superhelical ramp on the histone octamer surface is obtained from a relatively small amount of electrostatic neutralization of the DNA phosphate charge by positively charged histone groups, especially arginine residues. Here we present a theoretical analysis of a simple model that emphasizes the competition between the high degree of bending of the stiff DNA molecule required for its tight curvature on the histone octamer and the neutralization of the DNA phosphate charge by basic histone residues. Our calculation accounts for the strong influence of condensed counterions on the electrostatic interactions. We find that the minimum amount of free energy required to bend DNA into axial conformity with the superhelical ramp at physiological salt concentration can be provided by a scant 6% neutralization of the phosphate charge, in close correspondence to the stoichiometric neutralization of phosphate charge by the arginine side chain that intrudes into the inward-facing minor groove of each DNA double helical turn.     

Synthetic thermally reversible gel systems. V

Differential thermal analysis has been used to study the fusion of aqueous thermally reversible gels of gelatin and polyacrylylglycinamide (PAG). In the case of gelatin gels, endotherms close to the melting point are readily observed and these are sometimes preceeded by a small exothermic heat of gel reorganization. Calculations are presented to show that breaking of the gelatin gel network requires only a small fraction of the observed endothermic heat of fusion and that most of the heat is required for melting larger crystallites within gelatin aggregates and for perhaps a helix → coil transition. Failure to observe endotherms by DTA over the known temperature range of fusion of PAG gels is consistent with prior measurements and conclusions. The noncrystallinity of PAG gels and soluble aggregates together with a heat of crosslinking of only ?5 to ?10 kcal/mole of crosslinks places the heat of fusion of PAG gels outside the lower limits of DTA sensitivity.     

Molecular structures and intramolecular interactions in dimethyl cyclohexane isomers

The geometries of ten isomers of dimethyl cyclohexane were determined by ab initio gradient geometry refinement with the 4-21G basis set. It is found that many intramolecular interactions are clearly manifested by correlated structural trends, and that they are consistent with strain energies calculated by employing previously defined ab initio group equivalents. Specifically, non-bonded interactions are found between two adjacent methyl groups in some of the forms, and between axial methyl groups and adjacent axial C? H bonds in others. Unperturbed axial C? H and C? C bonds are consistently longer than equatorial bonds. In general, C? H bonds which are involved in non-bonded repulsive interactions are shortened, i.e., strengthened, and the corresponding H? C? C angles are large, compared to non-interacting parameters.     

Spectrophotometric methods for the determination of osmium-III Reaction of osmium tetroxide with 1:5-diphenylcarbo- hydrazide in aqueous solutions followed by extraction of the complex

-A spectrophotometric method has been developed which is applicable to the determination of extremely small quantities of osmium. Osmium is oxidised to the octovalent state, then added to an acidic aqueous solution containing 1:5-diphenylcarbohydrazide (DPC). After heating the aqueous solution to 65°, the osmium-DPC complex is extracted with chloroform. A molar absorbancy index of about 150,000 is obtained. From 7 to 25 μg of osmium can be determined with a coefficient of variation of 6%. It was established that Fe^III, Cu^II, Ru^III and Au^III seriously interfere in the determination of osmium by this method, while Cr^VI, Ni^II, Mo^VI, Ir^III and chloride interfere only when present in relatively high concentrations.     

Dithiocarbamate complexes of cyclopentadienylcobalt(III), [Co(η-C5H5)(L)(S2CNR2)] (L = ligand)

The reactions of [Co(η-C₅H₅)(L)I₂] with Na[S₂CNR₂] (R = alkyl or phenyl) give [Co(η-C₅H₅)(I)(S₂CNR₂)] (I) when L = CO and [Co(η-C₅H₅)(L)(S₂CNR₂)]I (II) when L is a tertiary phosphine, phosphite or stibine, or organo-isocyanide ligand. In similar reactions [Co(η-C₅H₅)(CO)(C₃F₇)I] gives [Co(η-C₅H₅)(C₃F₇)(S₂CNMe₂)] and [Mn(η-MeC₅H₄)(CO)₂(NO)]PF₆ forms [Mn(η-MeC₅H₄)(NO)(S₂CNR₂)]. The iodide ligands in I may be displaced by L, to give II, or by other ligands such as [CN]^?, [NCS]^?, H₂O or pyridine whilst SnCl₂ converts it to SnCl₂I. The iodide counter-anion in II may be replaced by others to give [BPh₄]^?, [Co(CO)₄]^? or [NO₃]^? salts. However [CN]^? acts differently and displaces (PhO)₃P from [Co(η-C₅H₅){P(OPh)₃}(S₂CNMe)]I to give [Co(η-C₅H₅)(CN)(S₂CNMe₂)] which may be alkylated reversibly by MeI and irreversibly by MeSO₃F to [Co(η-C₅H₅)(CNMe)(S₂CNMe₂)]⁺ salts. Conductivity measurements suggest that solutions of I in donor solvents are partially ionized with the formation of [Co(η-C₅H₅)(solvent)(S₂CNR₂)]⁺ I^? species. The IR and ¹H NMR spectra of the various complexes are reported. They are consistent with pseudo-octahedral “pianostool” molecular structures in which the bidentate dithiocarbamate ligands are coordinated to the metal atoms through both sulphur atoms.     

Some binuclear complexes of iron and cobalt with isocyanide ligands

Whereas Co₂(CO)₈ and RNC (R= Me, Et, and Cy) react to give mixtures of [(RNC)₅Co] [Co(CO)₄] and the covalent, carbonyl-bridged [(RNC)_mCo₂(CO)_8?m] derivatives (m = 1–3), [(π-dienyl)Fe(CO)₂]₂ give only [(π-dienyl)₂Fe₂(CO)_4?n(CNR)_n] complexes (dienyl = C₅H₅, MeC₅H₄ and C₉H₇; n = 1–2) that exist in solution as mixtures of cis- and trans-CO- and RNC-bridged tautomers with the μ-RNC species decreasing in importance as the bulk of R increases.