Variational bounds on shear-driven turbulence and turbulent Boussinesq convection

Based on earlier studies by Hopf (1941), Doering and Constantin (1992, 1994, 1995) have recently formulated a new “background” technique for obtaining upper bounds on turbulent fluid flow quantities. This method produces upper bounds on the limit supremum of long time averages, making no statistical assumptions about the flow in contrast to the well-known Howard-Busse approach. The full optimisation problems posed by this method for the momentum transport in turbulent Couette flow and the heat transport (with zero background flow) in turbulent Boussinesq convection are solved here for the first time at asymptotically large Reynolds number and Rayleigh number within Busse's multiple boundary layer approximation to extract the best (lowest) possible upper bounds available. Intriguingly, the original bounds isolated by Busse (1969, 1970) within the confines of statistical stationarity are recovered exactly using this new formalism. The optimal background velocity profile for turbulent Couette flow is found to be shearless in the interior thus differing from Busse's “ ” mean shear result. In the convective case, an interesting degeneracy in the formulation of the background variational problem leads to an indeterminacy in the optimal background temperature profile. Only for one special choice is the isothermal core feature of Busse's mean profile recovered.     

Identification of archaeal proteins that affect the exosome function in vitro

Background  

The archaeal exosome is formed by a hexameric RNase PH ring and three RNA binding subunits and has been shown to bind and degrade RNA in vitro. Despite extensive studies on the eukaryotic exosome and on the proteins interacting with this complex, little information is yet available on the identification and function of archaeal exosome regulatory factors.     

Critical behavior in the relaminarization of localized turbulence in pipe flow

The statistics of the relaminarization of localized turbulence in a pipe are examined by direct numerical simulation. As in recent experimental data [J. Peixinho and T. Mullin, Phys. Rev. Lett. 96, 094501 (2006)10.1103/PhysRevLett.96.094501], the half-life for the decaying turbulence is consistent with the scaling (Rec-Re) -1, indicating a boundary crisis of the localized turbulent state familiar in low-dimensional dynamical systems. The crisis Reynolds number is estimated as Rec=1870, a value within 7% of the experimental value 1750. We argue that the frequently asked question, of which initial disturbances at a given Re trigger sustained turbulence in a pipe, is really two separate questions: the "local phase space" question (local to the laminar state) of what threshold disturbance at a given Re is needed to initially trigger turbulence, followed by the "global phase space" question of whether Re exceeds Rec at which point the turbulent state becomes an attractor.     

Modulation of humoral immune response to oral BCG vaccination by Mycobacterium bovis BCG Moreau Rio de Janeiro (RDJ) in healthy adults

We hypothesize that the energy strategy of a cell is a key factor for determining how, or if, the immune system interacts with that cell. Cells have a limited number of metabolic states, in part, depending on the type of fuels the cell consumes. Cellular fuels include glucose (carbohydrates), lipids (fats), and proteins. We propose that the cell's ability to switch to, and efficiently use, fat for fuel confers immune privilege. Additionally, because uncoupling proteins are involved in the fat burning process and reportedly in protection from free radicals, we hypothesize that uncoupling proteins play an important role in immune privilege. Thus, changes in metabolism (caused by oxidative stresses, fuel availability, age, hormones, radiation, or drugs) will dictate and initiate changes in immune recognition and in the nature of the immune response. This has profound implications for controlling the symptoms of autoimmune diseases, for preventing graft rejection, and for targeting tumor cells for destruction.     

Using nonlinear transient growth to construct the minimal seed for shear flow turbulence

Linear transient growth analysis is commonly used to suggest the structure of disturbances which are particularly efficient in triggering transition to turbulence in shear flows. We demonstrate that the addition of nonlinearity to the analysis can substantially change the prediction made in pipe flow from simple two-dimensional streamwise rolls to a spanwise and cross-stream localized three-dimensional state. This new nonlinear optimal is demonstrably more efficient in triggering turbulence than the linear optimal indicating that there are better ways to design perturbations to achieve transition.     

The effect of data scaling on dual prices and sensitivity analysis in linear programs

In many practical situations scaling the data is necessary to solve linear programs. This note explores the relationships in translating the sensitivity analysis between the original and the scaled problems.     

Coherent structures in localized and global pipe turbulence

The recent discovery of unstable traveling waves (TWs) in pipe flow has been hailed as a significant breakthrough with the hope that they populate the turbulent attractor. We confirm the existence of coherent states with internal fast and slow streaks commensurate in both structure and energy with known TWs using numerical simulations in a long pipe. These only occur, however, within less energetic regions of (localized) "puff" turbulence at low Reynolds numbers (Re=2000-2400), and not at all in (homogeneous) "slug" turbulence at Re=2800. This strongly suggests that all currently known TWs sit in an intermediate region of phase space between the laminar and turbulent states rather than being embedded within the turbulent attractor itself. New coherent fast streak states with strongly decelerated cores appear to populate the turbulent attractor instead.     

Asymmetric, helical, and mirror-symmetric traveling waves in pipe flow

New families of three-dimensional nonlinear traveling waves are discovered in pipe flow. In contrast with known waves [H. Faisst and B. Eckhardt, Phys. Rev. Lett. 91, 224502 (2003); H. Wedin and R. R. Kerswell, J. Fluid Mech. 508, 333 (2004), they possess no discrete rotational symmetry and exist at a significantly lower Reynolds numbers (Re). First to appear is a mirror-symmetric traveling wave which is born in a saddle node bifurcation at Re=773. As Re increases, "asymmetric" modes arise through a symmetry-breaking bifurcation. These look to be a minimal coherent unit consisting of one slow streak sandwiched between two fast streaks located preferentially to one side of the pipe. Helical and nonhelical rotating waves are also found, emphasizing the richness of phase space even at these very low Reynolds numbers.