Heterometallic hexanuclear isobutyrate clusters based on di- and tripodal alcohols

Four hexanuclear coordination clusters containing $\{{\mathrm{M}}_4^{\mathrm{II}}{\mathrm{M}}_2^{\mathrm{III}}\}$ cores of edge-sharing coordination octahedra exemplify how mixed-spin derivatives of a homonuclear parent structure, [${\mathrm{Mn}}_4^{\mathrm{II}}{\mathrm{Mn}}_2^{\mathrm{III}}{\mathrm{L}}_8$(N–O)₄], can be realized by a ligand ‘shrink-wrapping’ approach, resulting in [${\mathrm{Mn}}_2^{\mathrm{II}}{\mathrm{Co}}_2^{\mathrm{II}}{\mathrm{Mn}}_2^{\mathrm{III}}{\mathrm{L}}_8$(N–O)₄]- and [${\mathrm{Co}}_4^{\mathrm{II}}{\mathrm{Fe}}_2^{\mathrm{III}}{\mathrm{L}}_8$(N-O)₄]-type clusters (L = isobutyrate, N–O = methyldiethanolamine, n-butyldiethanolamine, or triethanolamine). The resulting core structures are either virtually isostructural to the parent structure or differ in the placement of the peripheral metal ions, depending on the mix of structure-directing carboxylate and alkoxyamine ligands with large, flexible alkyl chains. Whereas the $\{{\mathrm{Mn}}_4^{\mathrm{II}}{\mathrm{Mn}}_2^{\mathrm{III}}\}$ and {${\mathrm{Co}}_4^{\mathrm{II}}{\mathrm{Fe}}_2^{\mathrm{III}}$} complexes show dominant antiferromagnetic exchange, ferrimagnetic coupling features are exhibited by two {${\mathrm{Mn}}_2^{\mathrm{II}}{\mathrm{Co}}_2^{\mathrm{II}}{\mathrm{Mn}}_2^{\mathrm{III}}$} clusters.     

ToxAlerts: A Web Server of Structural Alerts for Toxic Chemicals and Compounds with Potential Adverse Reactions

The article presents a Web-based platform for collecting and storing toxicological structural alerts from literature and for virtual screening of chemical libraries to flag potentially toxic chemicals and compounds that can cause adverse side effects. An alert is uniquely identified by a SMARTS template, a toxicological endpoint, and a publication where the alert was described. Additionally, the system allows storing complementary information such as name, comments, and mechanism of action, as well as other data. Most importantly, the platform can be easily used for fast virtual screening of large chemical datasets, focused libraries, or newly designed compounds against the toxicological alerts, providing a detailed profile of the chemicals grouped by structural alerts and endpoints. Such a facility can be used for decision making regarding whether a compound should be tested experimentally, validated with available QSAR models, or eliminated from consideration altogether. The alert-based screening can also be helpful for an easier interpretation of more complex QSAR models. The system is publicly accessible and tightly integrated with the Online Chemical Modeling Environment (OCHEM, http://ochem.eu ). The system is open and expandable: any registered OCHEM user can introduce new alerts, browse, edit alerts introduced by other users, and virtually screen his/her data sets against all or selected alerts. The user sets being passed through the structural alerts can be used at OCHEM for other typical tasks: exporting in a wide variety of formats, development of QSAR models, additional filtering by other criteria, etc. The database already contains almost 600 structural alerts for such endpoints as mutagenicity, carcinogenicity, skin sensitization, compounds that undergo metabolic activation, and compounds that form reactive metabolites and, thus, can cause adverse reactions. The ToxAlerts platform is accessible on the Web at http://ochem.eu/alerts , and it is constantly growing.     

Ergodicity breaking induced by external coupled spatial-time noise processes

We report on the dynamics in a parameter plane of a continuous-time damped system driven by a periodic forcing. The dynamics is characterized by considering the Lyapunov exponents spectrum and conventional bifurcation diagrams, to discriminate periodic, quasiperiodic, and chaotic behaviors for each point in this parameter plane, according two parameters are simultaneously varied. Periodic structures born in a quasiperiodic region and embedded in a chaotic region, the so-called Arnold tongues, are observed. We show that the Arnold tongues periodic distribution is highly organized in a mixed set of two period-adding sequences. Other three typical periodic structures born and embedded in a chaotic region were observed, also individually organized in a mixed set of two period-adding sequences.     

Spin dynamics from time-dependent density functional perturbation theory

We present a new method to model spin-wave excitations in magnetic solids, based on the Liouville–Lanczos approach to time-dependent density functional perturbation theory. This method avoids computationally expensive sums over empty states and naturally deals with the coupling between spin and charge fluctuations, without ever explicitly computing charge-density susceptibilities. Spin-wave excitations are obtained with one Lanczos chain per magnon wave-number and polarization, avoiding the solution of the linear-response problem for every individual value of frequency, as other state-of-the-art approaches do. Our method is validated by computing magnon dispersions in bulk Fe and Ni, resulting in agreement with previous theoretical studies in both cases, and with experiment in the case of Fe. The disagreement in the case of Ni is also comparable with that of previous computations.     

Liquid water structure from X-ray absorption and emission,NMR shielding and X-ray diffraction

Here we investigate to what extent X-ray absorption(XAS) and emission(XES) spectroscopy, the oxygen-oxygen radial distribution function and σ(~1H) and σ(~(17)O) NMR shielding can be represented by a common set of model structures of liquid water. This is done by using a Monte Carlo-based fitting technique which fits the spectra based on a library of ～1400 precomputed spectra and assigns weights to contributions from different model structures. These are then used to reweight the contributions from the structures in the library to reveal classes of structures that are over-or under-represented in the library. The goal is to include different experimental data sets which are sensitive to different aspects of liquid water structure and thus narrow down which types of structures must exist in the real liquid.     

Synthesis of a new dextran-PEG-β-cyclodextrin host polymer using “Click” chemistry

The objective of this work was to synthesize a new type of dextran-based host polymer in which β-cyclodextrin (βCD) moieties are linked to the dextran backbone via flexible hydrophilic poly (ethylene glycol) (PEG) spacer. Short PEG-acrylate (M_n~375) was coupled with 5-hexynoic acid and grafted to the thiolated dextran using thiol-ene “click” chemistry. In the following step 6-monodeoxy-6-monoazido-βCD was “clicked” to the obtained alkyne terminated Dext-g-PEG copolymer (Dext-g-PEG-Hex-5-ynoate) using a copper (I)-catalyzed azide–alkyne cycloaddition. The reaction conditions and catalytic system were optimized. The synthesized Dext-g-PEG-βCD polymers have been characterized by ¹H-NMR spectroscopy and isothermal titration microcalorimetry and they show good binding properties comparing with conventional cross-linked pβCD.     

Heterometal expansion of oxozirconium carboxylate clusters

Although representing a 'thermodynamic sink', the octahedral oxozirconium {Zr(6)O(4)(OH)(4)} cluster structure can be magnetically functionalized by up to six 3d metal cations with a combination of flexible aminoalkoxide and carboxylate ligands.     

High Yielding Acid-Catalysed Hydrolysis of Cellulosic Polysaccharides and Native Biomass into Low Molecular Weight Sugars in Mixed Ionic Liquid Systems

Ionic media comprising 1-butyl-3-methylimidazolium chloride and the acidic deep eutectic solvent choline chloride/oxalic acid as co-solvent-catalyst, very efficiently convert various cellulosic substrates, including native cellulosic biomass, into water-soluble carbohydrates. The optimum reaction systems yield a narrow range of low molecular weight carbohydrates directly from cellulose, lignocellulose, or algal saccharides, in high yields and selectivities up to 98 %. Cellulose possesses significant potential as a renewable platform from which to generate large volumes of green replacements to many petrochemical products. Within this goal, the production of low molecular weight saccharides from cellulosic substances is the key to success. Native cellulose and lignocellulosic feedstocks are less accessible for such transformations and depolymerisation of polysaccharides remains a primary challenge to be overcome. In this study, we identify the catalytic activity associated with selected deep eutectic solvents that favours the hydrolysis of polysaccharides and develop reaction conditions to improve the outcomes of desirable low molecular weight sugars. We successfully apply the chemistry to raw bulk, non-pretreated cellulosic substances.