Crystallization of Arthrobacter sp. strain 1C N-(1-D-carboxyethyl)-L-norvaline dehydrogenase and its complex with NAD+

The novel NAD+-linked opine dehydrogenase from a soil isolate Arthrobacter sp. strain 1C belongs to an enzyme superfamily whose members exhibit quite diverse substrate specificites. Crystals of this opine dehydrogenase, obtained in the presence or absence of co-factor and substrates, have been shown to diffract to beyond 1.8 ? resolution. X-ray precession photographs have established that the crystals belong to space group P21212, with cell parameters a = 104.9, b = 80.0, c = 45.5 ? and a single subunit in the asymmetric unit. The elucidation of the three-dimensional structure of this enzyme will provide a structural framework for this novel class of dehydrogenases to enable a comparison to be made with other enzyme families and also as the basis for mutagenesis experiments directed towards the production of natural and synthetic opine-type compounds containing two chiral centres.     

Development and certification of reference materials for residues of organochlorine and organophosphorus pesticides in beef fat ACSL CRM 1 and 2

Beef fat samples were prepared and tested as candidate reference materials for organochlorine and organophosphorus pesticides. The CRMs consisted of beef fat spiked with pesticide solutions. One sample (ACSL CRM 1) was prepared containing close to 0.2 mg/kg of each of the organochlorine pesticides dieldrin and heptachlor epoxide. A second sample (ACSL CRM 2) was prepared containing close to 0.8 mg/kg of each of the organophosphorus pesticides diazinon, chlorpyrifos and ethion. The spiking levels and homogeneity of the materials were verified. The coefficients of variation of 5 analyses carried out to test between-jar homogeneity for each reference material were dieldrin, 3.5%; heptachlor epoxide, 1.1%; diazinon, 2.1%; chlorpyrifos, 1.2% and ethion, 3.1%. No instability in any of these compounds was detected over a twelve month period. The candidate reference materials were found to be suitable for certification by interlaboratory testing. The certification process was based on a two-stage nested design described in ISO Guide 35. Analysis of results reported by collaborating laboratories provided an assessment of the homogeneity of the reference materials. The certified values together with their upper and lower 95% confidence limits are: ACSL CRM 1*Dieldrin*0.199 mg/kg **(0.188, **0.210 mg/kg) *Heptachlor epoxide*0.194 mg/kg **(0.176, **0.212 mg/kg) ACSL CRM 2*Diazinon*0.805 mg/kg **(0.755, **0.855 mg/kg) *Chlorpyrifos*0.790 mg/kg **(0.728, **0.852 mg/kg) *Ethion*0.813 mg/kg **(0.746, **0.879 mg/kg). A certificate for each material was prepared according to the guidelines set out in ISO Guide 31.     

Reactions of dicobalt octacarbonyl and related compounds with gem-dihalides

Dicobalt octacarbonyl and some of its derivatives (NaCo(CO)₄, Co₄(CO)₁₂, Hg[Co(CO)₄]₂, [Co(CO)₃PPh₃]₂, NaCo(CO)₃PPh₃) react with activated gem-dihalides, R₂CX₂, such as dichlorodiphenylmethane, 9,9-dihalofluorenes and dimethyl dibromomalonate, to give the ‘dimer’ olefin, R₂CCR₂. The course of this conversion involves formation of the coupling product, R₂XCCXR₂, followed by dehalogenation of the latter. These separate steps have been confirmed for activated monohalides (bromodiphenylmethane, 9-bromofluorene, dimethyl bromomalonate) which were readily coupled by cobalt carbonyls, and for activated vicinal dihalides (D,L and meso-dibromostilbene, 9,9′-dichlorobisfluorenyl) which cobalt carbonyls readily dehalogenated. A radical mechanism is favored for these processes, and indirect evidence in its favor is presented.     

Oxygen atom transfer in models for molybdenum enzymes: isolation and structural, spectroscopic, and computational studies of intermediates in oxygen atom transfer from molybdenum(VI) to phosphorus(III)

Intermediates in the oxygen atom transfer from Mo(VI) to P(III), [Tp(iPr)MoOX(OPR3)] (Tp(iPr) = hydrotris(3-isopropylpyrazol-1-yl)borate; X = Cl-, phenolates, thiolates), have been isolated from the reactions of [Tp(iPr)MoO2X] with phosphines (PEt3, PMePh2, PPh3). The green, diamagnetic oxomolybdenum(IV) complexes possess local C(1) symmetry (by NMR spectroscopy) and exhibit IR bands assigned to nu(Mo==O) (approximately 950 cm(-1)) and nu(P==O) (1140-1083 cm(-1)) vibrations. The X-ray crystal structures of [Tp(iPr)MoOX(OPEt3)] (X = OC6H4-2-sBu, SnBu), [Tp(iPr)MoO(OPh)(OPMePh2)], and [Tp(iPr)MoOCl(OPPh3)] have been determined. The monomeric complexes exhibit distorted octahedral geometries, with coordination spheres composed of tridentate fac-Tp(iPr) and mutually cis monodentate terminal oxo, phosphoryl (phosphine oxide), and monoanionic X ligands. The electronic structures and stabilities of the complexes have been probed by computational methods, with the three-dimensional energy surfaces confirming the existence of a low-energy steric pocket that restricts the conformational freedom of the phosphoryl ligand and inhibits complete oxygen atom transfer. The reactivity of the complexes is also briefly described.     

On the Osipov–Pickup–Dunmur chirality index: why pseudoscalar functions are generally unsuitable to quantify chirality

The applicability of pseudoscalar functions, in general, and of the Osipov–Pickup–Dunmur chirality index, in particular, as consistent chirality measures is discussed. It is shown that due to the presence of chiral zeros these functions are unsuited to measure the chirality of objects described by more than two independent parameters.     

Living star polymer formation (RAFT) studied via electrospray ionization mass spectrometry

A mass spectrometry analysis has been performed on complex architecture polymeric material produced during reversible addition fragmentation chain transfer (RAFT) polymerizations yielding star polymers. Para‐acetoxystyrene (AcOSty) has been polymerized at 60 °C, using azobisisobutyronitrile (AIBN) as the thermally decomposing initiator, in the presence of the R‐group approach tetrafunctional RAFT agent (1,2,4,5‐tetrakis‐(2‐phenyl‐thioacetyl‐sulfanylmethyl)‐benzene). In addition to ideal star material, a variety of products unique to this mode of polymerization have been identified. These include star–star couples, stars terminated with initiator fragments, star–star couples terminated with initiator fragments and linear polymers, supporting the notion that these species are responsible for the structured molecular‐weight distributions measured for these systems when analyzed via gel permeation chromatography. The analysis begins with a study of AcOSty polymerizing (i) in the absence of any mediating agent and (ii) in the presence of a monofunctional RAFT agent, revealing the mode of termination of propagating poly(AcOSty) radicals as combination and that some ionization biases exist among variants of poly (AcOSty). The interpretation of the mass spectrometry data has been aided by a novel kinetic model of star polymerizations, allowing the rationalization of experimental observations with theoretical expectations. © 2008 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 46: 1873–1892, 2008