Crosslinked poly(ethylene oxide) containing siloxanes fabricated through thiol‐ene photochemistry

Homogenous amphiphilic crosslinked polymer films comprising of poly(ethylene oxide) and polysiloxane were synthesized utilizing thiol‐ene “ click ” photochemistry. A systematic variation in polymer composition was Carried out to obtain high quality films with varied amount of siloxane and poly(ethylene oxide). These films showed improved gas separation performance with high gas permeabilities with good CO₂/N₂ selectivity. Furthermore, the resulting films were also tested for its biocompatibility, as a carrier media which allow human adult mesenchymal stem cells to retain their capacity for osteoblastic differentiation after transplantation. The obtained crosslinked films were characterized using differential scanning calorimetry, dynamic mechanical analysis, thermogravimetric analysis, FTIR, Raman‐IR , and small angle X‐ray scattering. The synthesis ease and commercial availability of the starting materials suggests that these new crosslinked polymer networks could find applications in wide range of applications. © 2015 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2015 , 53, 1548–1557     

Mixed-Isotope Labeling with LC-IMS-MS for Characterization of Protein–Protein Interactions by Chemical Cross-Linking

Chemical cross-linking of proteins followed by proteolysis and mass spectrometric analysis of the resulting cross-linked peptides provides powerful insight into the quaternary structure of protein complexes. Mixed-isotope cross-linking (a method for distinguishing intermolecular cross-links) was coupled with liquid chromatography, ion mobility spectrometry and mass spectrometry (LC-IMS-MS) to provide an additional separation dimension to the traditional cross-linking approach. This method produced multiplet m/z peaks that are aligned in the IMS drift time dimension and serve as signatures of intermolecular cross-linked peptides. We developed an informatics tool to use the amino acid sequence information inherent in the multiplet spacing for accurate identification of the cross-linked peptides. Because of the separation of cross-linked and non-cross-linked peptides in drift time, our LC-IMS-MS approach was able to confidently detect more intermolecular cross-linked peptides than LC-MS alone.      

C-H vs C-C bond activation of acetonitrile and benzonitrile via oxidative addition: rhodium vs nickel and Cp* vs Tp' (Tp' = hydrotris(3,5-dimethylpyrazol-1-yl)borate, Cp* = η(5)-pentamethylcyclopentadienyl)

The photochemical reaction of (C(5)Me(5))Rh(PMe(3))H(2) (1) in neat acetonitrile leads to formation of the C-H activation product, (C(5)Me(5))Rh(PMe(3))(CH(2)CN)H (2). Thermolysis of this product in acetonitrile or benzene leads to thermal rearrangement to the C-C activation product, (C(5)Me(5))Rh(PMe(3))(CH(3))(CN) (4). Similar results were observed for the reaction of 1 with benzonitrile. The photolysis of 1 in neat benzonitrile results in C-H activation at the ortho, meta, and para positions. Thermolysis of the mixture in neat benzonitrile results in clean conversion to the C-C activation product, (C(5)Me(5))Rh(PMe(3))(C(6)H(5))(CN) (5). DFT calculations on the acetonitrile system show the barrier to C-H activation to be 4.3 kcal mol(-1) lower than the barrier to C-C activation. A high-energy intermediate was also located and found to connect the transition states leading to C-H and C-C activation. This intermediate has an agostic hydrogen interaction with the rhodium center. Reactions of acetonitrile and benzonitrile with the fragment [Tp'Rh(CNneopentyl)] show only C-H and no C-C activation. These reactions with rhodium are compared and contrasted to related reactions with [Ni(dippe)H](2), which show only C-CN bond cleavage.     

Theoretical study of the vibrational frequencies of carbon disulfide

A benchmark comparison for different computational methods and basis sets has been presented. In this study, five computational methods (Hartree–Fock (HF), MP2, B3LYP, MPW1MP91, and PBE1PBE) along with 18 basis sets have been applied to optimize the geometry of carbon disulfide (CS₂), and further calculate the vibrational frequencies of the optimized geometries. The differences between the calculated frequencies and corresponding experimental data are used to evaluate the efficiency of each combination of computational method and basis set. The comparison of frequency difference indicates that B3LYP generally gives the best prediction of frequencies for CS₂, whereas the other two density functional theory (DFT) methods, i.e., MPW1PW91 and PBE1PBE, often give parallel results. Although MP2 predicts the frequencies with accuracy almost as good as those from DFT methods, in a particular case, HF calculation outperforms MP2 as well as MPW1PW91 and PBE1PBE for prediction of the frequency of asymmetrical stretching for CS₂. © 2013 Wiley Periodicals, Inc.     

The Effects of Ring Strain on Cyclic Tetraaryl[5]cumulenes

Cyclic tetraaryl[5]cumulenes ( 1 a–f ) have been synthesized and studied as a function of increasing ring strain. The magnitude of ring strain is approximated by the extent of bending of the cumulenic core as assessed by a combination of X-ray crystallographic analysis and DFT calculations. Trends are observed in ¹³C NMR, UV-vis, and Raman spectra associated with ring strain, but the effects are small. In particular, the experimental HOMO-LUMO gap is not appreciably affected by bending of the [5]cumulene framework from ca. 174° (λ_max=504 nm) in 1 a to ca. 178° (λ_max=494 nm) in 1 f .     

Infrared spectroscopic study of natural hydrotalcites carrboydite and hydrohonessite

Infrared spectroscopy has proven most useful for the study of anions in the interlayer of natural hydrotalcites. A suite of naturally occurring hydrotalcites including carrboydite, hydrohonessite, reevesite, motukoreaite and takovite were analysed. Variation in the hydroxyl stretching region was observed and the band profile is a continuum of states resulting from the OH stretching of the hydroxyl and water units. Infrared spectroscopy identifies some isomorphic substitution of sulphate for carbonate through an anion exchange mechanism for the minerals carrboydite and hydrohonessite. The infrared spectra of the CO3 and SO4 stretching region of takovite is complex because of band overlap. For this mineral some sulphate has replaced the carbonate in the structure. In the spectra of takovites, a band is observed at 1346 cm(-1) and is attributed to the carbonate anion hydrogen bonded to water in the interlayer. Infrared spectroscopy has proven most useful for the study of the interlayer structure of these natural hydrotalcites.     

Validating fin tissue as a non-lethal proxy to liver and muscle tissue for stable isotope analysis of yellow perch (Perca flavescens)

Stable isotope ecology typically involves sacrificing the animal to obtain tissues. However, with threatened species or in long-term longitudinal studies, non-lethal sampling techniques should be used. The objectives of this study were to (1) determine if caudal fin tissue could be used as a non-lethal proxy to liver and muscle for stable isotope analysis, and (2) assess the effects of ethanol preservation on δ¹⁵N and δ¹³C in fin tissue of juvenile yellow perch Perca flavescens. The δ¹³C of caudal fin was not significantly different from liver (t₂₃?=??0.58; p?=?0.57), and was more correlated with δ¹⁵N in liver (r²?=?0.78) than muscle (r²?=?0.56). Ethanol preservation enriched ¹⁵N and ¹³C for caudal fins, but by using our developed regression models, these changes in δ¹⁵N and δ¹³C can now be corrected. Overall, caudal fin tissue is a more reliable proxy to liver than muscle for δ¹⁵N and δ¹³C in yellow perch.     

Drude polarizable force field for aliphatic ketones and aldehydes,and their associated acyclic carbohydrates

The majority of computer simulations exploring biomolecular function employ Class I additive force fields (FF), which do not treat polarization explicitly. Accordingly, much effort has been made into developing models that go beyond the additive approximation. Development and optimization of the Drude polarizable FF has yielded parameters for selected lipids, proteins, DNA and a limited number of carbohydrates. The work presented here details parametrization of aliphatic aldehydes and ketones (viz. acetaldehyde, propionaldehyde, butaryaldehyde, isobutaryaldehyde, acetone, and butanone) as well as their associated acyclic sugars (d-allose and d-psicose). LJ parameters are optimized targeting experimental heats of vaporization and molecular volumes, while the electrostatic parameters are optimized targeting QM water interactions, dipole moments, and molecular polarizabilities. Bonded parameters are targeted to both QM and crystal survey values, with the models for ketones and aldehydes shown to be in good agreement with QM and experimental target data. The reported heats of vaporization and molecular volumes represent a compromise between the studied model compounds. Simulations of the model compounds show an increase in the magnitude and the fluctuations of the dipole moments in moving from gas phase to condensed phases, which is a phenomenon that the additive FF is intrinsically unable to reproduce. The result is a polarizable model for aliphatic ketones and aldehydes including the acyclic sugars d-allose and d-psicose, thereby extending the available biomolecules in the Drude polarizable FF.     

Stable sequestration of single-walled carbon nanotubes in self-assembled aqueous nanopores

We demonstrate the ability to stably sequester individual single-walled carbon nanotubes (SWNTs) within self-contained nanometer-scale aqueous volumes arrayed in an organic continuum. Large areal densities of 4 × 10(9) cm(-2) are readily achieved. SWNTs are incorporated into a surfactant mesophase which forms 2.3 nm diameter water channels by lyotropic self-assembly. Near-infrared fluorescence spectroscopy demonstrates that the SWNTs exist as well-dispersed tubes that are stable over several months and through multiple cycles of heating and cooling. Absence of physical distortion of the mesophase suggests that the SWNTs are stabilized by adsorbed surfactants that do not extend considerably from the surface. Our findings have important implications for templated assembly of carbon nanotubes using soft mesophases and the development of functional nanocomposites.