Solid-state density functional theory investigation of the terahertz spectra of the structural isomers 1,2-dicyanobenzene and 1,3-dicyanobenzene

The high-resolution waveguide terahertz (THz) time-domain spectra (20-100 cm(-1)) of the two structural isomers 1,2-dicyanobenzene (1,2-DCB) and 1,3-dicyanobenzene (1,3-DCB) have been modeled and assigned using solid-state density functional theory. The THz spectra of these similar molecules are distinctly different in the low-frequency region with the differences being driven by modifications of the crystal packing arrangement between the isomers. Simulations utilizing the hybrid density functionals B3LYP and PBE0 were performed to determine the origins of the observed vibrational features. External lattice vibrations (hindered translations and rotations) are found to dominate these spectra, reinforcing the need for proper solid-state models in the analysis of the THz spectra of organic molecular solids. These calculations were able to account for all of the observed spectral features exhibited by both isomers, even in the case of 1,2-DCB, where the spectrum was found to be the result of two coexisting crystalline polymorphs.     

Experimental measurement of the induced dipole moment of an isolated molecule in its ground and electronically excited states: indole and indole-H2O

Reported here are measurements of the magnitude and orientation of the induced dipole moment that is produced when an indole molecule in its ground S(0) and electronically excited S(1) states is polarized by the attachment of a hydrogen bonded water molecule in the gas phase complex indole-H(2)O. For the complex, we find the permanent dipole moment values mu(IW)(S(0)) = 4.4 D and mu(IW)(S(1)) = 4.0 D, values that are substantially different from calculated values based on vector sums of the dipole moments of the component parts. From this result, we derive the induced dipole moment values mu(I) (*)(S(0)) = 0.7 D and mu(I) (*)(S(1)) = 0.5 D. The orientation of the induced moment also is significantly different in the two electronic states. These results are quantitatively reproduced by a purely electrostatic calculation based on ab initio values of multipole moments.     

Investigation of the low-frequency vibrations of crystalline tartaric acid using terahertz spectroscopy and solid-state density functional theory

The room temperature and cryogenic terahertz (THz) spectra (10-95 cm(-1)) of l-tartaric acid and dl-tartaric acid were investigated. At 293 K, the l-tartaric acid spectrum showed four absorption features at 36.4, 61.6, 78.7, and 87.3 cm(-1) in the experimental spectrum. Once cooled to 78 K, these features narrowed and shifted to 35.9, 63.4, 81.1, and 90.1 cm(-1). The THz spectrum of dl-tartaric acid is significantly different, containing only a single absorption at 79.9 cm(-1) at room temperature, which shifts to 82.9 cm(-1) at 78 K. Solid-state density functional theory calculations [B3LYP/6-311G(2d,2p)] were performed to simulate the crystalline structure of both molecular solids and to assign the observed spectral features to specific atomic motions. The THz spectrum of l-tartaric acid is particularly interesting in that it contains a theoretically unaccounted for spectral feature that may arise from second-order phonon processes and also exhibits an anomalous red-shifting absorption feature with cooling that is shown to originate from negative thermal expansion of the crystal.     

Noncovalent interactions in paired DNA nucleobases investigated by terahertz spectroscopy and solid-state density functional theory

Cocrystallized adenine and thymine derivatives, along with the pure monomeric crystals, were investigated by terahertz spectroscopy and solid-state density functional theory (DFT). The methylated nucleobase derivatives crystallize in planar hydrogen-bonded adenine-thymine pairs similar to the manner found in DNA. The spectra obtained for 1-methylthymine, 9-methyladenine, and the 1:1 cocrystal in the range of 10-100 cm(-1) clearly demonstrate that absorptions in this spectral range originate from the uniquely ordered assembly and the intermolecular interactions found in each individual crystal system. The quality of spectral reproduction for the DFT simulations of each system was clearly improved by the inclusion of an empirical correction term for London-type dispersion forces to the calculations. Notably, it was found that these weak dispersion forces in the adenine-thymine cocrystal were necessary to produce a properly converged crystal structure and meaningful simulation of the terahertz vibrational spectrum.     

Terahertz spectroscopy and solid-state density functional theory simulations of the improvised explosive oxidizers potassium nitrate and ammonium nitrate

Terahertz spectroscopy provides a noninvasive and nondestructive method for detecting and identifying concealed explosives. In this work, the room-temperature and cryogenic terahertz spectra of two common improvised explosive oxidizers, namely, potassium nitrate (KN) and ammonium nitrate (AN), are presented, along with detailed solid-state density functional theory (DFT) analyses of the crystalline structures and spectral features. At both 294 and 78 K, KN exhibits two terahertz absorption features below 100 cm(-1) that have been assigned through DFT simulations to arise from hindered nitrate rotations in the KN-II crystalline polymorph. The terahertz spectrum of AN exhibits a pronounced temperature dependence. The 294 K spectrum is free of any absorptions, whereas the 78 K spectrum consists of several narrow and intense peaks. The origin of this large difference is the polymorphic transition that occurs during cooling of AN, where room-temperature AN-IV is converted to AN-V at 255 K. The 78 K terahertz spectrum of AN is assigned here to various ion rotations and translations in the AN-V polymorph lattice. The analysis of the room-temperature AN-IV terahertz spectrum proved to be more complicated. The solid-state DFT simulations predicted that the room-temperature crystal structure of AN is not very well described using the standard Pmmn space-group symmetry as previously believed. The AN-IV polymorph actually belongs to the Pmn2(1) space group, and the perceived Pmmn symmetry results from vibrational averaging through nitrate rotations. This newly observed Pmn2(1) crystal symmetry for room-temperature AN is the reason for the absence of absorption features in the 294 K terahertz spectrum of AN and provides new insight into the polymorphic transitions of this ionic solid.     

Measuring the Elasticity of Poly‐l‐Proline Helices with Terahertz Spectroscopy

The rigidity of poly‐l ‐proline is an important contributor to the stability of many protein secondary structures, where it has been shown to strongly influence bulk flexibility. The experimental Young's moduli of two known poly‐l ‐proline helical forms, right‐handed all‐cis (Form I) and left‐handed all‐trans (Form II), were determined in the crystalline state by using an approach that combines terahertz time‐domain spectroscopy, X‐ray diffraction, and solid‐state density functional theory. Contrary to expectations, the helices were found to be considerably less rigid than many other natural and synthetic polymers, as well as differing greatly from each other, with Young's moduli of 4.9 and 9.6 GPa for Forms I and II, respectively.     

Terahertz spectroscopy of the explosive taggant 2,3-dimethyl-2,3-dinitrobutane

The terahertz spectrum of the crystalline explosive taggant 2,3-dimethyl-2,3-dinitrobutane (C(6)H(12)N(2)O(4)) has been investigated as an alternative means of detecting solid-state explosives. The room-temperature spectrum exhibits two broad absorption features centered at 38.3 and 49.2 cm(-1). Once the sample is cooled to liquid-nitrogen temperatures, the resolution of three additional peaks occurs, with absorption maxima now appearing at 40.1, 47.5, 56.6, 63.9, and 73.6 cm(-1). Solid-state density functional theory simulations, both with and without London force dispersion corrections, have been used for the assignment of the experimental cryogenic THz spectrum to specific molecular motions in the crystalline solid. The B3LYP hybrid density functional paired with the 6-311G(2d,2p) basis set provides an excellent reproduction of the experimental data revealing that the THz spectrum arises from a mixture of intramolecular torsional vibrations localized primarily in the nitro groups and intermolecular lattice vibrations composed of rigid molecular rotations.