Computational Design of Novel Allosteric Inhibitors for Plasmodium falciparum DegP

The serine protease, DegP exhibits proteolytic and chaperone activities, essential for cellular protein quality control and normal cell development in eukaryotes. The P. falciparum DegP is essential for the parasite survival and required to combat the oscillating thermal stress conditions during the infection, protein quality checks and protein homeostasis in the extra-cytoplasmic compartments, thereby establishing it as a potential target for drug development against malaria. Previous studies have shown that diisopropyl fluorophosphate (DFP) and the peptide SPMFKGV inhibit E. coli DegP protease activity. To identify novel potential inhibitors specific to PfDegP allosteric and the catalytic binding sites, we performed a high throughput in silico screening using Malaria Box, Pathogen Box, Maybridge library, ChEMBL library and the library of FDA approved compounds. The screening helped identify five best binders that showed high affinity to PfDegP allosteric (T0873, T2823, T2801, {"type":"entrez-protein","attrs":{"text":"RJC02337","term_id":"1480409465","term_text":"RJC02337"}}RJC02337, CD00811) and the catalytic binding site (T0078L, T1524, T2328, BTB11534 and 552691). Further, molecular dynamics simulation analysis revealed {"type":"entrez-protein","attrs":{"text":"RJC02337","term_id":"1480409465","term_text":"RJC02337"}}RJC02337, BTB11534 as the best hits forming a stable complex. WaterMap and electrostatic complementarity were used to evaluate the novel bio-isosteric chemotypes of {"type":"entrez-protein","attrs":{"text":"RJC02337","term_id":"1480409465","term_text":"RJC02337"}}RJC02337, that led to the identification of 231 chemotypes that exhibited better binding affinity. Further analysis of the top 5 chemotypes, based on better binding affinity, revealed that the addition of electron donors like nitrogen and sulphur to the side chains of butanoate group are more favoured than the backbone of butanoate group. In a nutshell, the present study helps identify novel, potent and Plasmodium specific inhibitors, using high throughput in silico screening and bio-isosteric replacement, which may be experimentally validated.     

Melting heat transfer in the stagnation‐point flow of an upper‐convected Maxwell (UCM) fluid past a stretching sheet

The steady laminar boundary layer flow and heat transfer past a stretching sheet arre considered. Upper‐convected Maxwell (UCM) fluid is treated as a rheological model. The resulting nonlinear differential system is solved by homotopy analysis method (HAM). The influence of melting parameter (M), Prandtl number (Pr), Deborah number (β) and stretching ratio (A = a/c) on the velocity and temperature profiles is thoroughly examined. It is noticed that fields are effected appreciably with the variation of parameters. Furthermore, it is seen that the local Nusselt number is a decreasing function of melting parameter. Copyright © 2011 John Wiley & Sons, Ltd.     

MHD Three-Dimensional Flow of Viscoelastic Fluid with Convective Surface Boundary Condition

This article reports the magnetohydrodynamic (MHD) three-dimensional flow of viscoelastic fluid over a stretching surface with heat transfer. Mathematical analysis is formulated using convective boundary conditions. Computations of dimensionless velocity and temperature fields are presented. The tabulated values show excellent agreement between present and previous limiting analysis. Graphical results show the impact of embedded parameters entering into the problem.     

Performance evaluation of praseodymium doped fiber amplifiers

Optical Review - In this paper, we report the performance evaluation of praseodymium doped fiber amplifier (PDFA) operating in 1.25–1.35 μm band of wavelengths based on...     

Mixed convection unsteady stagnation point flow over a stretching sheet with heat transfer in the presence of variable free stream

An analysis is performed for the unsteady mixed convection flow of an incompressible viscous fluid about a stagnation point on a stretching sheet in the presence of a variable free stream. The equations of motion and energy are transformed into the ordinary differential equations by using similarity transformations. Homotopy analysis method is used for the solution of the governing problem. The results have been discussed by plots. The present values of the function are shown very close to the previous limiting solutions. Copyright © 2011 John Wiley & Sons, Ltd.     

Water‐Splitting Catalysis and Solar Fuel Devices: Artificial Leaves on the Move

The development of new energy materials that can be utilized to make renewable and clean fuels from abundant and easily accessible resources is among the most challenging and demanding tasks in science today. Solar‐powered catalytic water‐splitting processes can be exploited as a source of electrons and protons to make clean renewable fuels, such as hydrogen, and in the sequestration of CO₂ and its conversion into low‐carbon energy carriers. Recently, there have been tremendous efforts to build up a stand‐alone solar‐to‐fuel conversion device, the “artificial leaf”, using light and water as raw materials. An overview of the recent progress in electrochemical and photo‐electrocatalytic water splitting devices is presented, using both molecular water oxidation complexes (WOCs) and nano‐structured assemblies to develop an artificial photosynthetic system.     

Carbon Nanotube Reinforced Titanium Metal Matrix Composites Prepared by Powder Metallurgy—A Review

Titanium-based metal composites (TMCs) are showing great potential to replace existing traditional materials in aerospace, automotive, and other high temperature engineering applications. This is due to their excellent mechanical, thermal, and physical properties and improved strength to weight ratio. Weight savings in the aerospace industry results in higher efficiency. Carbon nanotubes (CNTs), because of their low density and high Young's modulus, are considered to be an excellent reinforcement for metal matrix composites (MMCs). In the last 20 years extensive research has been carried out to investigate the combination of carbon nanotubes with aluminum, nickel, copper, magnesium, and other metal matrices. The production techniques such as mechanical alloying through powder metallurgy routes and their effects on the mechanical properties of CNT reinforced TMCs are reviewed in this article. The role of the volume fraction of carbon nanotubes and their dispersion into the metal matrix are highlighted. Governing equations to predict the mechanical and tribological properties of CNT reinforced titanium matrix composites are deduced. With the help of this initial prediction of properties, the optimal processing parameters can be optimized. Successful development of CNT reinforced TMCs would result in better wear and mechanical behavior and enhance their ability to withstand high temperature and structural loading environments.     

Effect of ion irradiation induced defects on the excess conductivity of Cu1−xTlxBa2Ca1Cu2O8−δ superconductor thin films

The Cu_1?xTl_xBa₂Ca₁Cu₂O_8?δ superconductor thin film samples were bombarded with protons, Si and Au ions of energies 6, 20 and 20 MeV respectively using 5MV tandem pelletron accelerator at Experimental Physics Labs. Each un-irradiated sample had different values of normal state resistivity and the zero resistance critical temperature. The zero resistivity critical temperature has been increased after the irradiation by Si and Au ions. The fluctuation induced conductivity (FIC) analysis of the as-prepared and the ion irradiated samples were performed in the light of Aslamasov–Larkin (AL) theory. The FIC analysis has shown three dimensional (3D) fluctuations in the order parameter in all the samples along with a cross-over to two dimensional (2D) fluctuations at higher temperature. The 3D–2D cross-over temperature has been shifted to higher values after the ion irradiation. Moreover, a direct correlation between the zero resistivity critical temperature, 2D–3D cross-over temperature (T_LD) and superconductivity fluctuation temperature (T_scf) was observed. These studies have shown that the fluctuation induced conductivity (excess conductivity) depends on the density of defects and is independent of their nature.