A marker method for the solution of the damped Burgers' equation

A new method for the solution of the damped Burgers' equation is described. The marker method relies on the definition of a convective field associated with the underlying partial differential equation; the information about the approximate solution is associated with the response of an ensemble of markers to this convective field. Some key aspects of the method, such as the selection of the shape function and the initial loading, are discussed in some details. The marker method is applicable to a general class of nonlinear dispersive partial differential equations. © 2005 Wiley Periodicals, Inc. Numer Methods Partial Differential Eq, 2006     

Block copolymers of acrylic acid and butyl acrylate prepared by reversible addition–fragmentation chain transfer polymerization: Synthesis,characterization, and use in emulsion polymerization

Amphiphilic block copolymers of poly(acrylic acid‐b‐butyl acrylate) were prepared by reversible addition–fragmentation chain transfer polymerization in a one‐pot reaction. These copolymers were characterized by NMR, static and dynamic light scattering, tensiometry, and size exclusion chromatography. The aggregation characteristics of the copolymers corresponded to those theoretically predicted for a star micelle. In a butyl acrylate and methyl methacrylate emulsion polymerization, low amounts of these copolymers could stabilize latices with solid contents up to 50%. © 2003 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 41: 684–698, 2003     

Promotion by phosphorus compounds of ruthenium-catalyzed methyl formate homologation

Trivalent phosphorus compounds are promoters for methyl formate homologation to ethanol and ethyl formate catalyzed by ruthenium compounds in the presence of iodide at 220°C and 27 MPa of synthesis gas. Under these conditions the phosphines are quaternized, but decomposition of phosphonium salts occurs during the reaction. Promotion is also observed for methyltriphenyl-phosphonium bromide and triphenylphosphine sulfide, but benzyltrimethyl-ammonium bromide, triphenylarsine, and triphenylantimony are not effective. The major ruthenium species present is Ru(CO)₃I₃^- but with triphenylantimony a trimethylantimony complex, Ru(CO)₂(Sb(CH₃)₃)₂I₂, can be isolated in high yield.     

Cytochrome-c detection

Following a myocardial infarction (MI) cells die or are damaged and their contents leak into the blood circulation, resulting in elevated serum levels of various enzymes, proteins, and organic molecules. Over the past few decades, it has become standard practice to employ the detection of these elevated substances as markers for the confirmation of MIs and to monitor MI patients’ response to treatment. Although it has previously been shown that cytochrome-c, a small respiratory protein, is among those elevated, the lack of a suitable detection system has prevented its routine use in the diagnosis of MIs. We present a preliminary study in which chemiluminescence was employed to detect elevated levels of cytochrome-c in the serum of MI patients. The technique, which is specific for c-type proteins, is approx 30 times more sensitive than the traditional Coomassie blue stain and can detect as little as 0.03 μg of protein. It also has potential for diagnostic use in other diseases that are characterized by mitochondrial damage.     

Microstructure and electrical properties of BaTiO<Subscript>3</Subscript> and (Ba,Sr)TiO<Subscript>3</Subscript> ferroelectric thin films on nickel electrodes

Nickel thin films have been sputtered on standard Si/SiO₂ substrates with TiO₂ as an adhesive layer. The thermal stability of these substrates was analyzed. SEM images show an increase in grain size with annealing temperature. They were found to be stable till 800°C, beyond which the nickel layer disintegrated. These substrates were used for deposition of BaTiO₃ and (Ba,Sr)TiO₃ dielectric thin films under a reducing atmosphere. The dielectric thin films were processed with various pyrolysis and annealing temperatures in order to optimize the dielectric properties. Increased pyrolysis temperatures showed an increase in the grain size. Results on these nickelised substrates were finally compared with dielectric films deposited on platinized silicon substrates under identical conditions but crystallized in an oxygen atmosphere.     

Stereoselective synthesis of optically active bicyclic beta-lactam carboxylic acids that target pilus biogenesis in pathogenic bacteria

Optically active bicyclic beta-lactams were synthesized, starting from 2-H-delta 2-thiazolines and Meldrum's acid derivatives. Several methods to accomplish an ester hydrolysis without damaging the beta-lactam framework were investigated. A rapid CsOH saponification of the beta-lactam methyl esters was developed and protonation of the Cs-carboxylates by Amberlite (IR-120 H+) afforded a series of bicyclic beta-lactam carboxylic acids. Moreover, a convenient method for the synthesis of 2-H-delta 2-thiazolinecarboxylic acid methyl ester 2 was developed. Bicyclic beta-lactam carboxylic acids 7a-g and aldehydes 4a-d were screened for their affinity to the bacterial periplasmic chaperone PapD using a surface plasmon resonance technique. beta-Lactams substituted with large acyl substitutents showed better binding to the chaperone than the native C-terminal peptide PapG 8, demonstrating that bicyclic beta-lactams constitute a new class of potential bacterial chaperone inhibitors.     

Photochemistry of iminium salts : Electron transfer mechanisms for singlet quenching and photoaddition of n-electron donating alcohols and ethers

Several aspects of past and current studies in the area of iminium salt photochemistry are discussed. Investigations of olefin-iminium salt photoaddition and photocyclization reactions are reviewed and conclusions about electron-transfer pathways for fluorescence quenching and reaction are discussed. The results of recent studies of alcohol and ether photoaddition to 2-phenyl-1-pyrrolinium salts are presented. These C-C bond forming processes occur in moderate yields to produce β-amino alcohol or ether products. In addition, alcohols and ethers serve as efficient quenchers of pyrrolinium salt fluorescence. Rate constants for quenching appear to be dependent upon both the oxidation potential of the alcohols and ethers and the availability of C-H bond α to oxygen. This data along with deuterium isotope effects on quenching combine to suggest a common mechanism for both fluorescence quenching and photoaddition. The nature of this mechanism is tested using the comparative quenching effeciencies of the tertiary alcohols t-butyl alcohol and 1,2,2-trimethyl-1-cyclopropanol. The latter alcohol having a weak C-C bond adjacent to the hydroxyl function quenches the fluorescence of 2-phenyl-1-pyrrolium salts at a rate two orders of magnitude greater than for t-butyl alcohol. The observations made are interpreted in terms of a sequential electron-proton transfer mechanism for quenching and photoaddition. Lastly, the relationship of iminium salt photochemical studies to other investigations of electron-transfer photochemistry is discussed.     

Toward a microchip-based solid-phase extraction method for isolation of nucleic acids

A silica-based solid-phase extraction system suitable for incorporation into a microchip platform (nu-total analytical system; nu-TAS) would find utility in a variety of genetic analysis protocols, including DNA sequencing. The extraction procedure utilized is based on adsorption of the DNA onto bare silica. The procedure involves three steps: (i) DNA adsorption in the presence of a chaotropic salt, (ii) removal of contaminants with an alcohol/water solution, and (iii) elution of the adsorbed DNA in a small volume of buffer suitable for polymerase chain reaction (PCR) amplification. Multiple approaches for incorporation of this protocol into a microchip were examined with regard to extraction efficiency, reproducibility, stability, and the potential to provide PCR-amplifiable DNA. These included packing microchannels with silica beads only, generating a continuous silica network via sol-gel chemistry, and combinations of these. The optimal approach was found to involve immobilizing silica beads packed into the channel using a sol-gel network. This method allowed for successful extraction and elution of nanogram quantities of DNA in less than 25 min, with the DNA obtained in the elution buffer fraction. Evaluation of the eluted DNA indicated that it was of suitable quality for subsequent amplification by PCR.