Characterization of N-terminal processing of group VIA phospholipase A<Subscript>2</Subscript> and of potential cleavage sites of amyloid precursor protein constructs by automated identification of signature peptides in LC/MS/MS analyses of proteolytic digests

Dysregulation of proteolytic processing of the amyloid precursor protein (APP) contributes to the pathogenesis of Alzheimer's Disease, and the Group VIA phospholipase A(2) (iPLA(2)beta) is the dominant PLA(2) enzyme in the central nervous system and is subject to regulatory proteolytic processing. We have identified novel N-terminal variants of iPLA(2)beta and previously unrecognized proteolysis sites in APP constructs with a C-terminal 6-myc tag by automated identification of signature peptides in LC/MS/MS analyses of proteolytic digests. We have developed a Signature-Discovery (SD) program to characterize protein isoforms by identifying signature peptides that arise from proteolytic processing in vivo. This program analyzes MS/MS data from LC analyses of proteolytic digests of protein mixtures that can include incompletely resolved components in biological samples. This reduces requirements for purification and thereby minimizes artifactual modifications during sample processing. A new algorithm to generate the theoretical signature peptide set and to calculate similarity scores between predicted and observed mass spectra has been tested and optimized with model proteins. The program has been applied to the identification of variants of proteins of biological interest, including APP cleavage products and iPLA(2)beta, and such applications demonstrate the utility of this approach.     

A Rapid and Efficient Way to Dynamic Creation of Cross‐Reactive Sensor Arrays Based on Ionic Liquids

Based on the simple counterion exchange of ionic liquids, a rapid, facile, and efficient strategy to create a cross‐reactive sensor array with a dynamic tunable feature was developed, and exemplified by the construction of a sensor array for the identification and classification of nitroaromatics and explosives mimics. To achieve a good sensing system with fast response, good sensitivity, and low detection limit, the synthesized ionic liquid receptors were tethered onto a silica matrix with a macro‐mesoporous hierarchical structure. Through the facile anion exchange approach, abundant ionic‐liquid‐based individual receptors with diversiform properties, such as different micro‐environments, diverse molecular interactions, and distinctive physico‐chemical properties, were easily and quickly synthesized to generate a distinct fingerprint of explosives for pattern recognition. The reversible anion exchange ability further endowed the sensor array with a dynamic tunable feature as well as good controllability and practicality for real‐world application. With the assistance of statistical analysis, such as principal component analysis (PCA) and linear discrimination analysis (LDA), an optimized‐size array with a good resolution was rationally established from a large number of IL‐based receptors. The performed experiments suggested that the ionic‐liquid‐based sensing protocol is a general and powerful strategy for creating a cross‐reactive sensor array that could find a wide range of applications for sensing various analytes or complex mixtures.     

Well‐Defined Flowerlike NdOCl Nanostructures: Nonaqueous Sol–Gel Synthesis,Nanoscale Characterization and Their Magnetic and Photoluminescence Properties

A facile nonaqueous solution route for the fabrication of NdOCl nanostructures based on a ligand‐exchange protocol and further thermal decomposition in organic medium, using only chloride salt as the neodymium source, is reported and the formation mechanism is proposed. The morphology, crystal structure, and chemical compositions of the sample were characterized at the nanoscale. XRD results and selected‐area electron diffraction patterns show that the sample is purely tetragonal NdOCl without any other impurity phases. TEM results show that the NdOCl nanostructures have a well‐defined flowerlike shape, which looks like a chrysanthemum just about to bloom. Magnetization measurements reveal that the NdOCl nanoflowers show room‐temperature ferromagnetism. The photoluminescence properties were also studied. These results are significant for fundamental research and promising applications of rare‐earth‐based nanostructures.     

GPU accelerated simulations of 3D deterministic particle transport using discrete ordinates method

Graphics Processing Unit (GPU), originally developed for real-time, high-definition 3D graphics in computer games, now provides great faculty in solving scientific applications. The basis of particle transport simulation is the time-dependent, multi-group, inhomogeneous Boltzmann transport equation. The numerical solution to the Boltzmann equation involves the discrete ordinates (S_n) method and the procedure of source iteration. In this paper, we present a GPU accelerated simulation of one energy group time-independent deterministic discrete ordinates particle transport in 3D Cartesian geometry (Sweep3D). The performance of the GPU simulations are reported with the simulations of vacuum boundary condition. The discussion of the relative advantages and disadvantages of the GPU implementation, the simulation on multi GPUs, the programming effort and code portability are also reported. The results show that the overall performance speedup of one NVIDIA Tesla M2050 GPU ranges from 2.56 compared with one Intel Xeon X5670 chip to 8.14 compared with one Intel Core Q6600 chip for no flux fixup. The simulation with flux fixup on one M2050 is 1.23 times faster than on one X5670.     

A Method for Microalgae Proteomics Analysis Based on Modified Filter-Aided Sample Preparation

With the fast development of microalgal biofuel researches, the proteomics studies of microalgae increased quickly. A filter-aided sample preparation (FASP) method is widely used proteomics sample preparation method since 2009. Here, a method of microalgae proteomics analysis based on modified filter-aided sample preparation (mFASP) was described to meet the characteristics of microalgae cells and eliminate the error caused by over-alkylation. Using Chlamydomonas reinhardtii as the model, the prepared sample was tested by standard LC-MS/MS and compared with the previous reports. The results showed mFASP is suitable for most of occasions of microalgae proteomics studies.     

Multi-wavelength operation of LD side-pumped Nd:YAG laser

A dual-wavelength laser at 1064 nm and 1319 nm is obtained by a single Nd:YAG crystal rod. On the basis of 1064 nm and 1319 nm dual-wavelength laser installation, the second harmonic waves at 532 nm and 660 nm can be achieved by using non-linear frequency conversion technology. When 1064 nm and 1319 nm lasers oscillate simultaneously, the maximum output power is 30.5 W and 8.78 W, respectively. When the 1319 nm laser is restrained, we obtain a 35.6 W maximum output power at 1064 nm and by contrary 11.2 W at 1319 nm. The maximum output powers of 532 nm and 660 nm lasers are 5.34 W and 1.353 W when oscillating simultaneously. With one of them restrained, the maximum output power is 6.72 W at 532 nm and 1.90 W at 660 nm. The optimum repetition rate of the acousto-optic Q-switch is 10.5 KHz and 20.5 KHz for 532 nm and 660 nm lasers, respectively. The optical-to-optical conversion efficiency from the fundamental waves to the harmonic waves is 17.5% and 15.4%. The instability is less than 2%.     

Interim Anatase Coating Layer Stabilizes Rutile@CrxOy Photoanode for Visible‐Light‐Driven Water Oxidation

Ternary core–shell heterostructured rutile@anatase@Cr_xO_y nanorod arrays were elaborately designed as photoanodes for efficient photoelectrochemical water splitting under visible‐light illumination. The four‐fold enhanced and stabilized visible‐light photocurrent highlights the unique role of the interim anatase layer in accelerating the interfacial charge transfer from the Cr_xO_y chromophore to rutile nanorods.     

A hybrid adaptively genetic algorithm for task scheduling problem in the phased array radar

A phased array radar (PAR) is used to detect new targets and update the information of those detected targets. Generally, a large number of tasks need to be performed by a single PAR in a finite time horizon. In order to utilize the limited time and the energy resources, it is necessary to provide an efficient task scheduling algorithm. However, the existing radar task scheduling algorithms can't be utilized to release the full potential of the PAR, because of those disadvantages such as full PAR task structure ignored, only good performance in one aspect considered and just heuristic or the meta-heuristic method utilized. Aiming at above issues, an optimization model for the PAR task scheduling and a hybrid adaptively genetic (HAGA) algorithm are proposed. The model considers the full PAR task structure and integrates multiple principles of task scheduling, so that multi-aspect performance can be guaranteed. The HAGA incorporates the improved GA to explore better solutions while using the heuristic task interleaving algorithm to utilize wait intervals to interleave subtasks and calculate fitness values of individuals in efficient manners. Furthermore, the efficiency and the effectiveness of the HAGA are both improved by adopting chaotic sequences for the population initialization, the elite reservation and the mixed ranking selection, as well as designing the adaptive crossover and the adaptive mutation operators. The simulation results demonstrate that the HAGA possesses merits of global exploration, faster convergence, and robustness compared with three state-of-art algorithms—adaptive GA, hybrid GA and highest priority and earliest deadline first heuristic (HPEDF) algorithm.     

Selective diethylzinc reduction of imines in the presence of ketones catalyzed by Ni(acac)2

A selective reduction method of an electronically deficient imine in the presence of ketone was developed by employing Et(2)Zn and 5 mol % of Ni(acac)(2). The method was applied in the reduction of S(S)-tert-butanesulfinyl ketimines 1 to afford amines 2 in 23-92% yields and 73:27 to 98:2 diastereoselectivities. A plausible mechanism was proposed on the basis of an NMR study.