Ternary copper complexes for photocleavage of DNA by red light: direct evidence for sulfur-to-copper charge transfer and d-d band involvement

A new class of ternary copper(II) complexes of formulation [Cu(L(n)B](ClO(4)) (1-4), where HL(n) is a NSO-donor Schiff base (HL(1), HL(2)) and B is a NN-donor heterocyclic base viz. 1,10-phenanthroline (phen) and 2,9-dimethyl-1,10-phenanthroline (dmp), are prepared, structurally characterized, and their DNA binding and photocleavage activities studied in the presence of red light. Ternary complex [Cu(L(3))(phen)](ClO(4)) (5) containing an ONO-donor Schiff base and a binary complex [Cu(L(2))(2)] (6) are also prepared and structurally characterized for mechanistic investigations of the DNA cleavage reactions. While 1-4 have a square pyramidal (4 + 1) CuN(3)OS coordination geometry with the Schiff base bonded at the equatorial sites, 5 has a square pyramidal (4 + 1) geometry with CuN(3)O(2) coordination with the alcoholic oxygen at the axial site, and 6 has a square planar trans-CuN(2)O(2) geometry. Binding of the complexes 1-4 to calf thymus DNA shows the relative order: phen > dmp. Mechanistic investigations using distamycin reveal minor groove binding for the complexes. The phen complexes containing the Schiff base with a thiomethyl or thiophenyl moiety show red light induced photocleavage. The dmp complexes are essentially photonuclease inactive. Complexes 5 and 6 are cleavage inactive under similar photolytic conditions. A 10 microM solution of 1 displays a 72% cleavage of SC DNA (0.5 microg) on an exposure of 30 min using a 603 nm Nd:YAG pulsed laser (60 mJ/P) in Tris-HCl buffer (pH 7.2). Significant cleavage of 1 is also observed at 694 nm using a Ruby laser. Complex 1 is cleavage inactive under argon or nitrogen atmosphere. It shows a more enhanced cleavage in pure oxygen than in air. Enhancement of cleavage in D(2)O and inhibition with sodium azide addition indicate the possibility of the formation of singlet oxygen as a reactive intermediate leading to DNA cleavage. The d-d band excitation with red light shows significant enhancement of cleavage yield. The results indicate that the phen ligand is necessary for DNA binding of the complex. Both the sulfur-to-copper charge transfer band and copper d-d band excitations helped the DNA cleavage. While the absorption of a red photon induces a metal d-d transition, excitation at shorter visible wavelengths leads to the sulfur-to-copper charge transfer band excitation at the initial step of photocleavage. The excitation energy is subsequently transferred to ground state oxygen molecules to produce singlet oxygen that cleaves the DNA.     

A zero differential overlap study of chemical binding in ammonia-borane and carbony l-borane

A cndo/2D study of the charge distribution obtained through Mulliken population analysis in the ground state of the title compounds shows that the features of charge distribution found by severalab initio calculations are fairly well reproduced by this method. The one-particle density, the interference density at the mid-point of the bond axis and the kinetic part of the interference energy calculated through the deorthogonalized density matrices over a wide range of intermolecular separation between the donor and the acceptor show that the one-particle density and the interference density steadily grow with decreasing internuclear separation, while the kinetic interference energy starts with negative value at large distance, then decreases and passes through a minima near but above the equilibrium distance and then increases rapidly below it conforming to the characteristic general behaviour of the kinetic component of Morse curve. The orbital pairwise interference density and the corresponding kinetic energy components reveal that the orbitals involved in the covalent binding are σ_2p AO of B and 2S and σ_2p AO of N and C atoms in H₃B-NH₃ and H₃B-CO respectively.     

Semiempirical evaluation of the global hardness of the atoms of 103 elements of the periodic table using the most probable radii as their size descriptors

Relying upon the fact that the density functional computation of the global hardness of the atoms of the elements are still at large and there is some mathematical in congruency between the theory and operational formula of finite difference approximation, we have suggested a radial‐dependent ansatz for evaluating global hardness of atoms as: η=a(7.2/r)+b (in eV), where, “a” and “b” are the constants and r is the absolute radius of atoms in angstrom unit. The ansatz is invoked to evaluate the global hardness of atoms of 103 element of the periodic table. The evaluated new set of global hardness is found to satisfy the sine qua non of a reasonable scale of hardness by exhibiting perfect periodicity of periods and groups and correlating the gross physicochemical properties of elements. The inertness of Hg and extreme reactivity Cs atoms are nicely correlated. The chemical reactivity and its variation in small steps in the series of lanthanide elements are also nicely reproduced. The results of the present semiempirical calculation also have strong correlation with the result of some sophisticated DFT calculation for a set of atoms. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2010     

Volumetric studies of some electrolytes in water and in aqueous sodium dodecylsulfate solutions at different temperatures

Abstract  

The apparent molar volumes (φ _v) of KCl, KNO₃, MgCl₂, and Mg(NO₃)₂ have been determined in water and in aqueous sodium dodecylsulfate solutions from density measurements at 303.15, 308.15, 313.15, 318.15, and 323.15 K. The limiting apparent molar volumes (j_v⁰ \varphi_{v}^{0} ) and experimental slopes (S _v) were derived from the Masson equation. The partial molar volume transfer (\Updelta [`(V)]<sub>\texttr</sub> ) (\Updelta {\bar{V}}_{\text{tr}} ) of the electrolytes were obtained from limiting apparent molar volume data from water to aqueous sodium dodecylsulfate solutions and have been interpreted in terms of ion–ion, hydrophilic–hydrophilic, and hydrophobic–hydrophobic interactions on the basis of a co-sphere overlap model. It is shown that the transfer volumes (\Updelta [`(V)]_\texttr ) (\Updelta {\bar{V}}_{\text{tr}} ) are positive and increase with increasing sodium dodecylsulfate concentration for all electrolytes. The structure making or breaking capacities of the electrolytes have been inferred from the sign of [∂² φ _v⁰/∂T ²]_p, i.e., the second derivative of the limiting apparent molar volume with respect to temperature at constant pressure. In water, KCl and KNO₃ exhibit structure breaking and MgCl₂ and Mg(NO₃)₂ exhibit structure making behavior. All the studied electrolytes were found to act as structure makers in aqueous sodium dodecylsulfate solutions.     

Gold nano-popcorn-based targeted diagnosis, nanotherapy treatment, and in situ monitoring of photothermal therapy response of prostate cancer cells using surface-enhanced Raman spectroscopy

Prostate cancer is the second leading cause of cancer-related death among the American male population, and the cost of treating prostate cancer patients is about $10 billion/year in the United States. Current treatments are mostly ineffective against advanced-stage prostate cancer and are often associated with severe side effects. Driven by these factors, we report a multifunctional, nanotechnology-driven, gold nano-popcorn-based surface-enhanced Raman scattering (SERS) assay for targeted sensing, nanotherapy treatment, and in situ monitoring of photothermal nanotherapy response during the therapy process. Our experimental data show that, in the presence of LNCaP human prostate cancer cells, multifunctional popcorn-shaped gold nanoparticles form several hot spots and provide a significant enhancement of the Raman signal intensity by several orders of magnitude (2.5 × 10(9)). As a result, it can recognize human prostate cancer cells at the 50-cells level. Our results indicate that the localized heating that occurs during near-infrared irradiation can cause irreparable cellular damage to the prostate cancer cells. Our in situ time-dependent results demonstrate for the first time that, by monitoring SERS intensity changes, one can monitor photothermal nanotherapy response during the therapy process. Possible mechanisms and operating principles of our SERS assay are discussed. Ultimately, this nanotechnology-driven assay could have enormous potential applications in rapid, on-site targeted sensing, nanotherapy treatment, and monitoring of the nanotherapy process, which are critical to providing effective treatment of cancer.     

A label-free gold-nanoparticle-based SERS assay for direct cyanide detection at the parts-per-trillion level

Cyanide is an extremely toxic lethal poison known to humankind. Developing rapid, highly sensitive, and selective detection of cyanide from water samples is extremely essential for human life safety. Driven by the need, here we report a gold-nanoparticle-based label-free surface-enhanced Raman spectroscopy (SERS) system for highly toxic cyanide ion recognition in parts-per-trillion level and to examine gold-nanoparticle-cyanide interaction. We have shown that the SERS assay can be used to probe the gold nanoparticle dissociation process in the presence of cyanide ions. Our experimental data indicates that gold-nanoparticle-based SERS can detect cyanide from a water sample at the 110 ppt level with excellent discrimination against other common anions and cations. The results also show that the SERS probe can be used to detect cyanide from environmental samples.     

The effect of variable viscosity on MHD viscoelastic fluid flow and heat transfer over a stretching sheet

An analysis has been carried out to study the momentum and heat transfer characteristics in an incompressible electrically conducting non-Newtonian boundary layer flow of a viscoelastic fluid over a stretching sheet. The partial differential equations governing the flow and heat transfer characteristics are converted into highly non-linear coupled ordinary differential equations by similarity transformations. The effect of variable fluid viscosity, Magnetic parameter, Prandtl number, variable thermal conductivity, heat source/sink parameter and thermal radiation parameter are analyzed for velocity, temperature fields, and wall temperature gradient. The resultant coupled highly non-linear ordinary differential equations are solved numerically by employing a shooting technique with fourth order Runge–Kutta integration scheme. The fluid viscosity and thermal conductivity, respectively, assumed to vary as an inverse and linear function of temperature. The analysis reveals that the wall temperature profile decreases significantly due to increase in magnetic field parameter. Further, it is noticed that the skin friction of the sheet decreases due to increase in the Magnetic parameter of the flow characteristics.     

Mixed convection heat transfer in the boundary layers on an exponentially stretching surface with magnetic field

An analysis has been carried out to describe mixed convection heat transfer in the boundary layers on an exponentially stretching continuous surface with an exponential temperature distribution in the presence of magnetic field, viscous dissipation and internal heat generation/absorption. Approximate analytical similarity solutions of the highly non-linear momentum and energy equations are obtained. The present results are found to be in excellent agreement with previously published work on various special cases of the problem. Numerical results for temperature distribution and the local Nusselt number have been obtained for different values of the governing parameters. The numerical solutions are obtained by considering an exponential dependent stretching velocity and prescribed boundary temperature on the flow directional coordinate. The effects of various physical parameters like Prandtl number, Hartman number, Grashof number on dimensionless heat transfer characteristics are discussed in detail. In particular, it has been found that increase in Prandtl number decreases the skin-friction coefficient at the stretching surface, while increase in the strength of the magnetic field leads to increase in the local Nusselt number.     

An O-Acetylserine (thiol) Lyase from Leucaena leucocephala Is a Cysteine Synthase But Not a Mimosine Synthase

In plants, the final step of cysteine formation is catalyzed by O-acetylserine (thiol) lyase (OAS-TL). The purpose of this study was to isolate and characterize an OAS-TL from the tree legume Leucaena leucocephala (leucaena). Leucaena contains a toxic, nonprotein amino acid, mimosine, which is also formed by an OAS-TL, and characterization of this enzyme is essential for developing a mimosine-free leucaena for its use as a protein-rich fodder. The cDNA for a cytosolic leucaena OAS-TL isoform was obtained through interspecies suppression subtractive hybridization. A 40-kDa recombinant protein was purified from Escherichia coli and used in enzyme activity assays where it was found to synthesize only cysteine. The enzyme followed Michaelis-Menten kinetics, and the K _m was calculated to be 1,850?±?414 μM sulfide and the V _max was 200.6?±?19.92 μM cysteine min^?1. The N-terminal affinity His-tag was cleaved from the recombinant OAS-TL to eliminate its possible interference in binding with the substrate, 3-hydroxy-4-pyridone, for mimosine formation. The His-tag-cleaved OAS-TL was again observed to catalyze the formation of cysteine but not mimosine. Thus, the cytosolic OAS-TL from leucaena used in this study is specific for only cysteine synthesis and is different from previously reported OAS-TLs that also function as β-substituted alanine synthases.