A general method for affinity-based proteomic profiling of exo-α-glycosidases

Synthesis of iminosugar-based affinity-based proteomics probes for use in probing exo-α-glycosidase activity.     

Synthesis and use of mechanism-based protein-profiling probes for retaining beta-D-glucosaminidases facilitate identification of Pseudomonas aeruginosa NagZ

The NagZ class of retaining exo-glucosaminidases play a critical role in peptidoglycan recycling in Gram-negative bacteria and the induction of resistance to beta-lactams. Here we describe the concise synthesis of 2-azidoacetyl-2-deoxy-5-fluoro-beta-d-glucopyranosyl fluoride as an activity-based proteomics probe for profiling these exo-glycosidases. This active-site directed reagent covalently inactivates this class of retaining N-acetylglucosaminidases with exquisite selectivity by stabilizing the glycosyl-enzyme intermediate. Inactivated Vibrio cholerae NagZ can be elaborated with biotin or a FLAG-peptide epitope using the Staudinger ligation or the Sharpless-Meldal click reaction and detected at nanogram levels. This ABPP enabled the profiling of the Pseudomonas aeruginosa proteome and identification at endogenous levels of a tagged protein with properties consistent with those of PA3005. Cloning of the gene encoding this hypothetical protein and biochemical characterization enabled unambiguous assignment of this hypothetical protein as a NagZ. The identification and cloning of this NagZ may facilitate the development of strategies to circumvent resistance to beta-lactams in this human pathogen. As well, this general strategy, involving such 5-fluoro inactivators, may prove to be of general use for profiling proteomes and identifying glycoside hydrolases of medical importance or having desirable properties for biotechnology.     

Production of charged pions, kaons and antikaons in relativistic C + C and C + Au collisions

Production cross-sections of charged pions, kaons and antikaons have been measured in C+C and C+Au collisions at beam energies of 1.0 and 1.8 AGeV for different polar emission angles. The kaon and antikaon energy spectra can be described by Boltzmann distributions whereas the pion spectra exhibit an additional enhancement at low energies. The pion multiplicity per participating nucleon M(π⁺)/<A _part> is a factor of about 3 smaller in C+Au than in C+C collisions at 1.0 AGeV whereas it differs only little for the C and the Au target at a beam energy of 1.8 AGeV. The K⁺ multiplicities per participating nucleon M(K⁺)/ <A _part> are independent of the target size at 1 AGeV and at 1.8 AGeV. The K^- multiplicity per participating nucleon M(K^-)/ <A _part> is reduced by a factor of about 2 in C+Au as compared to C+C collisions at 1.8 AGeV. This effect might be caused by the absorption of antikaons in the heavy target nucleus. Transport model calculations underestimate the K^-/K⁺ ratio for C+C collisions at 1.8 AGeV by a factor of about 4 if in-medium modifications of K-mesons are neglected. Received: 10 December 1999 / Accepted: 14 November 2000     

Isotope ratio monitoring gas chromatography/Mass spectrometry of D/H by high temperature conversion isotope ratio mass spectrometry

Of all the elements, hydrogen has the largest naturally occurring variations in the ratio of its stable isotopes (D/H). It is for this reason that there has been a strong desire to add hydrogen to the list of elements amenable to isotope ratio monitoring gas chromatography/mass spectrometry (irm-GC/MS). In irm-GC/MS the sample is entrained in helium as the carrier gas, which is also ionized and separated in the isotope ratio mass spectrometer (IRMS). Because of the low abundance of deuterium in nature, precise and accurate on-line monitoring of D/H ratios with an IRMS requires that low energy helium ions be kept out of the m/z 3 collector, which requires the use of an energy filter. A clean mass 3 (HD(+.)) signal which is independent of a large helium load in the electron impact ion source is essential in order to reach the sensitivity required for D/H analysis of capillary GC peaks. A new IRMS system, the DELTA(plus)XL(trade mark), has been designed for high precision, high accuracy measurements of transient signals of hydrogen gas. It incorporates a retardation lens integrated into the m/z 3 Faraday cup collector. Following GC separation, the hydrogen bound in organic compounds must be quantitatively converted into H(2) gas prior to analysis in the IRMS. Quantitative conversion is achieved by high temperature conversion (TC) at temperatures >1400 degrees C. Measurements of D/H ratios of individual organic compounds in complicated natural mixtures can now be made to a precision of 2 per thousand (delta notation) or, better, with typical sample amounts of approximately 200 ng per compound. Initial applications have focused on compounds of interest to petroleum research (biomarkers and natural gas components), food and flavor control (vanillin and ethanol), and metabolic studies (fatty acids and steroids). Copyright 1999 John Wiley & Sons, Ltd.     

Extended-ion approximation and pressure shifts inF-band energies

Pressure variation of maximumF-band absorption energies in the halides of lithium, sodium and potassium has been investigated employing the extended-ion approximation for the calculation of theF-electron energy eigenvalues and using values of local compressibility in the neighbourhood of theF-centres which include the effect of vacancy and pressure. The results obtained agree with the experimental results.     

Dynamic stability of a porous rectangular plate

The study is devoted to a axial compressed porous-cellular rectangular plate. Mechanical properties of the plate vary across is its thickness which is defined by the non-linear function with dimensionless variable and coefficient of porosity. The material model used in the current paper is as described by Magnucki, Stasiewicz papers. The middle plane of the plate is the symmetry plane. First of all, a displacement field of any cross section of the plane was defined. The geometric and physical (according to Hook's law) relationships are linear. Afterwards, the components of strain and stress states in the plate were found. The Hamilton's principle to the problem of dynamic stability is used. This principle was allowed to formulate a system of five differential equations of dynamic stability of the plate satisfying boundary conditions. This basic system of differential equations was approximately solved with the use of Galerkin's method. The forms of unknown functions were assumed and the system of equations was reduced to a single ordinary differential equation of motion. The critical load determined used numerically processed was solved. Results of solution shown in the Figures for a family of isotropic porous-cellular plates. The effect of porosity on the critical loads is presented. In the particular case of a rectangular plate made of an isotropic homogeneous material, the elasticity coefficients do not depend on the coordinate (thickness direction), giving a classical plate. The results obtained for porous plates are compared to a homogeneous isotropic rectangular plate. (© 2006 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim)