Graft copolymerization. I. Grafting of hydroxyalkyl methacrylates on poly(vinyl alcohol)

New graft copolymers were synthesized by grafting hydroxyethyl methacrylate and hydroxpropyl methacrylate on poly(vinyl alcohol) in aqueous solution with Ce⁺⁴ions as initiator. The dependence of the percentage of grafting and monomer conversion on the concentration of the monomer, on the concentration of the initiator, on the total concentration of the reactants, and on temperature and duration of the reaction were investigated. Some basic properties of the graft copolymers and some preliminary permeation measurements of water vapors through films, made from these copolymers, are also reported.     

Boolean logic functions of a synthetic peptide network

Living cells can process rapidly and simultaneously multiple extracellular input signals through the complex networks of evolutionary selected biomolecular interactions and chemical transformations. Recent approaches to molecular computation have increasingly sought to mimic or exploit various aspects of biology. A number of studies have adapted nucleic acids and proteins to the design of molecular logic gates and computational systems, while other works have affected computation in living cells via biochemical pathway engineering. Here we report that de novo designed synthetic peptide networks can also mimic some of the basic logic functions of the more complex biological networks. We show that segments of a small network whose graph structure is composed of five nodes and 15 directed edges can express OR, NOR, and NOTIF logic.     

Adsorption of fast green and erythrosin-B to montmorillonite modified with crystal violet

Adsorption of erythrosin-B (EB) and fast green (FG) to a non-charged organosmectite based on crystal violet adsorbed up to 100% of the cation exchange capacity (CEC) was tested. Adsorption isotherms of EB and FG were prepared at 3, 24 and 50°C. All isotherms are of H-type reaching loads of approximately up to 20% of the original CEC of the crude montmorillonite (up to 0.15 and 0.10 mol dye kg^–1 clay for EB and FG, respectively). Adsorption decreases with temperature, indicating an exothermic process. Enthalpy was evaluated using van’t Hoff equation, yielding approximately –20 kJ mol^–1 for both dyes.     

Non-Direct Sequence Ions in the Tandem Mass Spectrometry of Protonated Peptide Amides—an Energy-Resolved Study

The fragmentation reactions of the MH⁺ ions of Leu-enkephalin amide and a variety of heptapeptide amides have been studied in detail as a function of collision energy using a QqToF beam type mass spectrometer. The initial fragmentation of the protonated amides involves primarily formation of b_n ions, including significant loss of NH₃ from the MH⁺ ions. Further fragmentation of these b_n ions occurs following macrocyclization/ring opening leading in many cases to b_n ions with permuted sequences and, thus, to formation of non-direct sequence ions. The importance of these non-direct sequence ions increases markedly with increasing collision energy, making peptide sequence determination difficult, if not impossible, at higher collision energies.

β-Sheet-induced chirogenesis in polymerization of oligopeptides

The origin of long homochiral biopolymers in living systems has recently been the focus of intense research. In one particular research line, scientists studied, experimentally and theoretically, chiral amplification obtained during peptide formation by polymerization of amino acid building blocks. It was suggested that processes leading to temporal or spatial separation, and thus, to the growth of homochiral polymers at the expense of their heterochiral counterparts, can explain the chirality observed in larger molecules. We introduce a simple model and stochastic simulation for the polymerization of amino acids and β-sheet formation, showing the crucial effects of the β sheets on the distributions of peptide lengths. When chiral affinities are included, racemic β sheets of alternating homochiral strands lead to the formation of chiral peptides, the isotacticity of which increases with length, consistent with previous experimental results in aqueous solutions. The tendency to form isotactic peptides is shown for both initially racemic and initially nonracemic systems, as well as for closed and open systems. We suggest that these or similar mechanisms may explain the origin of chiroselectivity in prebiotic environments.     

Improving weighted information criterion by using optimization

Although artificial neural networks (ANN) have been widely used in forecasting time series, the determination of the best model is still a problem that has been studied a lot. Various approaches available in the literature have been proposed in order to select the best model for forecasting in ANN in recent years. One of these approaches is to use a model selection strategy based on the weighted information criterion (WIC). WIC is calculated by summing weighted different selection criteria which measure the forecasting accuracy of an ANN model in different ways. In the calculation of WIC, the weights of different selection criteria are determined heuristically. In this study, these weights are calculated by using optimization in order to obtain a more consistent criterion. Four real time series are analyzed in order to show the efficiency of the improved WIC. When the weights are determined based on the optimization, it is obviously seen that the improved WIC produces better results.     

The accuracy of whole brain N-acetylaspartate quantification

A non-localizing pulse sequence to quantify the total amount of N-acetylaspartate (NAA) in the whole brain (WBNAA) was introduced recently [Magn. Reson. Med. 40, 684–689 (1998)]. However, it is known that regional magnetic field inhomogeneities, ΔB₀s, arising from susceptibility differences at tissue interfaces, shift and broaden local resonances to outside the integration window, leading to an underestimation of the true amount of NAA in the entire brain. To quantify the upper limit of this loss, the whole-head proton MR spectrum (¹H-MRS) of the water was integrated over the same frequency width as the NAA. The ratio of this area/total-water-line was 75 ± 5% in 5 volunteers. The procedure was repeated with the brain-only water peak, obtained by summing signals only from voxels within that organ from a three-dimensional chemical-shift-imaging (3D CSI) set. It indicated that <10% of the water signal loss occurred in the brain. Therefore, by analogy, WBNAA accounts for >90% of that metabolite.