Laser photoinitiated nitrosylation of 3-electron reduced Nm europaea hydroxylamine oxidoreductase: kinetic and thermodynamic properties of the nitrosylated enzyme

Hydroxylamine-cytochrome c554 oxidoreductase (HAO) catalyzes the 4-e(-) oxidation of NH(2)OH to NO(2)(-) by cytochrome c554. The electrons are transferred from NH(2)OH to a 5-coordinate heme known as P(460), the active site of HAO. From P(460), c-type hemes transport the electrons through the enzyme to a remote solvent-exposed c-heme, where cyt c554 reduction occurs. When 3-60 microM NO* are photogenerated by laser flash photolysis of N,N'-bis-(carboxymethyl)-N,N'-dinitroso-1,4-phenylenediamine, in a solution containing approximately 1 microM HAO prereduced by 3 e(-)/subunit, the HAO c-heme pool is subsequently oxidized by up to 1 e(-)/HAO subunit. The reaction rate for HAO oxidation shows first-order dependence on [HAO], and zero-order dependence on [NO*] (k(obs) = 1250 +/- 150 s(-)(1)). However, the total HAO oxidized shows hyperbolic dependence on [NO*]. We suggest that NO* first binds reversibly to P(460) giving a {Fe(NO)}(6) moiety. Intramolecular electron transfer (IET) from the c-heme pool then reduces P(460) to {Fe(NO)}.(7) The overall binding constant (K) for formation of {Fe(NO)}(7) from free NO* and 3-e(-) reduced HAO was measured at (7.7 +/- 0.6) x10(4) M(-1). This value is larger than that for typical ferriheme proteins ( approximately 10(4) M(-1)), but much smaller than that for the corresponding ferroheme proteins ( approximately 10(11) M(-1)). The final product generated by nitrosylating 3-e(-) reduced HAO is believed to be the same species obtained by adding NH(2)OH to the fully oxidized enzyme. The experiments described herein suggest that when NH(2)OH and HAO first react, only two of the NH(2)OH electrons end up in the c-heme pool. The other two remain at P(460) as part of an {Fe(NO)}(7) moiety. These results are discussed in relation to earlier studies that investigated the effect of putting fully oxidized and fully reduced HAO under 1 atm of NO*.     

A one-parameter formula for estimating the Λ well depth

A one parameter, semi-empirical formula for Λ-binding energy of heavy hypernuclei in the inverse powers of core mass number (A _c) has been developed in the framework of the folding model. Unlike similar calculations reported by other authors (Deloff 1971; Daskaloyanniset al 1985), we are able to take into account the effect arising from the difference in the number of protons and neutrons of the core nuclei having same mass number. The radius and diffuseness are parametrized using the experimentally known charge density data of a fairly large number of medium and heavy nuclei. The well depth parameter (i.e. Λ-binding energy in infinite nuclear matter) in the formula is obtained from a fit to theB _Λ data of _Λ ²⁸ Si, _Λ ⁴⁰ Ca, _Λ ⁵¹ V and _Λ ³⁹ Y. Using the original Λ-nucleus potential, theB _Λ of ground and the experimentally known excited states of these hypernuclei have also been calculated by solving numerically the two-body Schrödinger equation. The agreement with the experimental data is satisfactory.     

Selective one-electron reduction of Nitrosomonas europaea hydroxylamine oxidoreductase with nitric oxide

Hydroxylamine oxidoreductase (HAO) from the autotrophic bacterium Nitrosomonas europaea catalyzes the 4-e- oxidation of NH2-OH to NO2-. The e- are transferred from NH2OH to an unusual 5-coordinate heme known as P460, which is the active site of HAO, and from there to an array of seven c-type hemes. NO., generated by laser flash photolysis of N,N'-bis(carboxymethyl)-N,N'-dinitroso-1,4-phenylenediamine, is found to act as a 1-e- donor to HAO. Most likely NO. binds P460 to yield a [Fe(NO)]6 moiety, which then hydrolyzes to give the reduced enzyme and NO2-. The [Fe(NO)]6 moiety is also a plausible final intermediate in the oxidation of NH2OH.     

Quantifying the photoinduced release of nitric oxide from N,N'-bis(carboxymethyl)-N,N'-dinitroso-1,4-phenylenediamine. Effect of reducing agents on the mechanism of the photoinduced reactions

N,N'-Bis(carboxymethyl)-N,N'-dinitroso-1,4-phenylenediamine (1) fragments to release 1 equiv of NO* and the denitrosated radical of 1 (2), when exposed to a approximately 10 ns, 308 nm laser pulse. Species 2 can fragment to give another equivalent of NO* and the doubly denitrosated quinoimine derivative of 1 (3), it can recombine with NO* to give 1 and ring-nitrosated isomers of 1, or in the presence of a reducing agent, 2 can be reduced (to species 4). Photogenerated NO* can be used to probe fast reactions of biochemical interest, making 1 a valuable research tool. This paper focuses on the chemistry of 2, whose reactivity must be well characterized if 1 is to be used to its full potential. [Ru(NH3)6]2+ (RuII) and [Fe(CN)6]4- (FeII) were both shown to reduce 2, with bimolecular rate constants in the diffusion limit. When solutions initially containing 70 microM of RuII, 20 microM myoglobin (Mb) and varying amounts of 1 were irradiated, the only Mb reaction product was nitrosomyoglobin (MbNO). In contrast, in solutions containing only Mb and 1, Mb is converted to both MbNO and oxidized myoglobin (metMb). When FeII was used in place of RuII, Mb was oxidized to metMb, but approximately 100x more slowly than in solutions containing only Mb and 1. This showed that 2 first oxidized FeII to [Fe(CN)6]3- (FeIII), which then oxidized Mb at the slower rate. The ratio metMb/MbNO obtained in the experiments with FeII was 0.6, whereas the ratio predicted from previously known chemistry of 2 was approximately 1 under the experimental conditions. The result is explained if, upon photolysis, 1 first forms a caged encounter complex [2, NO*], which fragments to give 3 and 2 equiv of NO*, without ever releasing free 2 into solution. This hypothesis was further strengthened by analyzing the amount of NO* generated by photolysis of 1 in the absence of added reductant. The original mechanism underestimates the NO* generated, a problem solved by invoking direct release of NO* and 3 from photolysis of 1.     

Auto-thiophosphorylation activity of Src tyrosine kinase

Background

Intermolecular autophosphorylation at Tyr416 is a conserved mechanism of activation among the members of the Src family of nonreceptor tyrosine kinases. Like several other tyrosine kinases, Src can catalyze the thiophosphorylation of peptide and protein substrates using ATPγS as a thiophosphodonor, although the efficiency of the reaction is low.

Results

Here, we have characterized the ability of Src to auto-thiophosphorylate. Auto-thiophosphorylation of Src at Tyr416 in the activation loop proceeds efficiently in the presence of Ni²⁺, resulting in kinase activation. Other tyrosine kinases (Ack1, Hck, and IGF1 receptor) also auto-thiophosphorylate in the presence of Ni²⁺. Tyr416-thiophosphorylated Src is resistant to dephosphorylation by PTP1B phosphatase.

Conclusions

Src and other tyrosine kinases catalyze auto-thiophosphorylation in the presence of Ni²⁺. Thiophosphorylation of Src occurs at Tyr416 in the activation loop, and results in enhanced kinase activity. Tyr416-thiophosphorylated Src could serve as a stable, persistently-activated mimic of Src.