Unprecedented hour-long residence time of a cation in a left-handed G-quadruplex

Cations are critical for the folding and assembly of nucleic acids. In G-quadruplex structures, cations can bind between stacked G-tetrads and coordinate with negatively charged guanine carbonyl oxygens. They usually exchange between binding sites and with the bulk in solution with time constants ranging from sub-millisecond to seconds. Here we report the first observation of extremely long-lived K⁺ and NH₄⁺ ions, with an exchange time constant on the order of an hour, when coordinated at the center of a left-handed G-quadruplex DNA. A single-base mutation, that switched one half of the structure from left- to right-handed conformation resulting in a right–left hybrid G-quadruplex, was shown to remove this long-lived behaviour of the central cation.

An extremely long-lived cation has been detected in left-handed G-quadruplexes.     

The unexpected rearrangement of 1,5‐benzodiazepin‐2,4‐dione to a benzimidazol‐2‐one derivative during N,N'‐diglucosylation

Reaction of 1,5‐benzodiazepin‐2,4‐dione with 3‐O‐substituted‐5,6‐anhydro‐1,2‐isopropylidene‐α‐D‐glucofuranose gave the unexpected N,N'‐di‐glucofuranosyl benzimidazol‐2‐one by a novel rearrangement and ring closure reaction. A mechanism is proposed.     

Mechanism for resonant O electron stimulated desorption from condensed O2. Non-adiabatic transitions and dynamics

Absolute kinetic energy distributions and yields associated with ground state ³P and excited state ¹D oxygen atoms have been obtained for O⁻ anion electron stimulated desorption from condensed O₂ in the electron energy range 6–15 eV. The observed yields are understood as resulting essentially from dissociative electron attachment reactions via the two lowest ²Σ⁺_g O⁻₂ resonance states through adiabatic and non-adiabatic transitions to the limits O⁻(²P) + O(³P) and O⁻(²P) + O(¹D). The kinetic energy distributions show the prominent role of electron multiple collision processes and post-dissociation interactions of the O⁻ anions in the condensed phase.     

Structure determination of Na3DySi6O15 and crystal chemistry of zektzerite related compounds

The crystal structure of Na₃DySi₆O₁₅ has been solved and refined to an R₁=2.97% (wR₂=8.25%) for 1311 independent reflections. The compound was found to crystallize within the orthorhombic system with the space group Cmca (Z=8) and the lattice parameters: a=14.590(7) Å, b=17.813(4) Å, c=10.519(2) Å, V=2734.0 Å³, D_cal=3.11 g/cm³. The structure of Na₃DySi₆O₁₅ is a filled variant of the zektzerite with S like corrugated double chains of [SiO₄] tetrahedral, connected via Na⁺ and Dy³⁺ cations and running parallel to c-axis. The three-dimensional network results from the packing of these chains along [100] by skewering them in rods represented by the tunnels delimited by the S shape of the silicate chains. One of the main peculiar features of the Na₃DySi₆O₁₅ structure is the location of Na⁺ in tetrahedral sites with rather short Na-O bond lengths (2×2.243 and 2×2.262 Å).     

Proposed Mechanism for the Antitrypanosomal Activity of Quercetin and Myricetin Isolated from Hypericum afrum Lam.: Phytochemistry,In Vitro Testing and Modeling Studies

The in vitro activity of L. donovani (promastigotes, axenic amastigotes and intracellular amastigotes in THP1 cells) and T. brucei, from the fractions obtained from the hydroalcoholic extract of the aerial part of Hypericum afrum and the isolated compounds, has been evaluated. The chloroform, ethyl acetate and n-butanol extracts showed significant antitrypanosomal activity towards T. brucei, with IC₅₀ values of 12.35, 13.53 and 12.93 µg/mL and with IC₉₀ values of 14.94, 19.31 and 18.67 µg/mL, respectively. The phytochemical investigation of the fractions led to the isolation and identification of quercetin (1), myricitrin (2), biapigenin (3), myricetin (4), hyperoside (5), myricetin-3-O-β-d-galactopyranoside (6) and myricetin-3’-O-β-d-glucopyranoside (7). Myricetin-3’-O-β-d-glucopyranoside (7) has been isolated for the first time from this genus. The chemical structures were elucidated by using comprehensive one- and two-dimensional nuclear magnetic resonance (1D and 2D NMR) spectroscopic data, as well as high-resolution electrospray ionization mass spectrometry (HR-ESI–MS). These compounds have also been evaluated for their antiprotozoal activity. Quercetin (1) and myricetin (4) showed noteworthy activity against T. brucei, with IC₅₀ and IC₉₀ values of 7.52 and 5.71 µM, and 9.76 and 7.97 µM, respectively. The T. brucei hexokinase (TbHK1) enzyme was further explored as a potential target of quercetin and myricetin, using molecular modeling studies. This proposed mechanism assists in the exploration of new candidates for novel antitrypanosomal drugs.     

Collisional dynamics of Ag19 on Pd(100): a molecular dynamics study

By means of molecular dynamics simulations based on realistic n-body potentials we investigate structural and dynamical features inherent to the energetic collision of a silver cluster (Ag₁₉) on the Pd(100) substrate. Both the system and the impact energy (E_i = 95 eV) adopted have been chosen to parallel an experimental study of size selected Ag cluster deposition on Pd(100). Our results indicate that the experimental cross section obtained via thermal energy atom scattering at the same collision energy is well reproduced by the simulations.The modeling allows to rationalize the collision outcome in terms of defect production and cluster atoms implantation. The adsorbed structures have an heterogenous nature and are mostly two-dimensional.     

Crystal Structure of a New Ammonium Potassium Selenomolybdate Compound K3.31(NH4)0.69[Se2Mo5O21]·2H2O

An inorganic compound formulated as K_3.31(NH₄)_0.69[Se₂Mo₅O₂₁]·2H₂O has been synthesized by conventional solution method and characterized by scanning electron microscopy, IR, UV-Vis spectroscopies behaviors. The structure of the title compound has been determined from a single-crystal X-ray diffraction. It crystallizes in the monoclinic space group P2₁/n, with a?=?9.9371(2) ?, b?=?23.3545(2) ?, c?=?10.5179(2) ?, β?=?114.12(3)°, V?=?2227.7(5) ?³ and Z?=?4. It was revealed that the Strandberg-type polyoxoselenomolybdate cluster can be considered as a ring formed by five distorted edge- and corner-sharing MoO₆ octahedra, capped on both poles by a selenate pyramids sharing three vertices with the ring molybdenum centers. The Strandberg clusters are connected with ammonium ions and water molecules through hydrogen-bonding interactions which ensure the cohesion of the structure into a three-dimensional network.     

A note on the finite fractal dimension of the global attractors for dissipative nonlinear Schrödinger‐type equations

In this article, we present, throughout two basic models of damped nonlinear Schrödinger (NLS)–type equations, a new idea to bound from above the fractal dimension of the global attractors for NLS‐type equations. This could answer the following open issue: consider, for instance, the classical one‐dimensional cubic nonlinear Schrödinger equation $$u_t+i{u}_{xx}+i|u{|}^{2}u+\gamma u=f,f\in {\mathrm{??}}^2(?).$$ “How can we bound the fractal dimension of the associate global attractor without the need to assume that the external forcing term f has some decay at infinity (that is belonging to some weighted Lebesgue space)?”