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1.
《Journal of Saudi Chemical Society》2022,26(2):101415
The backbone structure (1,3,4-thiadiazole sulfone derivatives containing amide moiety) of target compounds was determined by modification and optimization of the theoretical design based on commercial chemical carboxin, including molecular docking, scaffold hopping, ligand expansion, etc.In this paper, 23 target compounds were synthesized by the combination of theoretical design and chemical synthesis, and characterized by 1H NMR, 13C NMR and HR MS. Addtionally, the antibacterical bioassay showed that most target compounds performed excellent inhibition on Xanthomonas axonopodis pv. citri (Xac) and Xanthomonas oryzae pv. oryzae (Xoo) in vitro. Meanwhile, molecular docking, molecular dynamics (MD) simulations, and studies on ligand/protein (carboxin/2FBW and 4n/2FBW) complex systems were displayed, and the interaction patterns of ligand/protein complex system were predicted by molecular docking. Besides, the ligand/protein complex system was subject to MD simulation. The analysis of molecular dynamics such as RMSD values suggested that compound/2FBW complexes were stable. MM/GBSA (Molecular mechanics generalized born surface area) dynamic binding affinity results revealed that the active residues (TYR58, HIS26, ARG43, SER39, etc.) played an essential part in the binding of the compound(s) to form a stable low-energy ligand/protein complex, while the MD trajectories demonstrated that the interactions of drugs with 2FBW affected the tertiary structure and increased the stability of protein. Besides, compound 4n also showed control efficacies (curative and protective) on Xoo in vivo, where the curative efficacy was 35.91% and the protective efficacy was 18.97%. In a word, this study showed that 1,3,4-thiadiazole sulfone derivatives containing amide moiety designed based on the structure of carboxin were promising agricultural antibacterial agents, featuring certain stability of binding affinity to proteins and carboxin. 相似文献
2.
Joseph Israel Gurti Prof. Xun-Lei Ding Ya-Ya Wang Yan Chen Dr. Wei Li Dr. Xin Wang 《Chemphyschem》2022,23(14):e202200124
The reaction of N2 with trinuclear niobium and tungsten sulfide clusters Nb3Sn and W3Sn (n=0–3) was systematically studied by density functional theory calculations with TPSS functional and Def2-TZVP basis sets. Dissociations of N−N bonds on these clusters are all thermodynamically allowed but with different reactivity in kinetics. The reactivity of Nb3Sn is generally higher than that of W3Sn. In the favorite reaction pathways, the adsorbed N2 changes the adsorption sites from one metal atom to the bridge site of two metal atoms, then on the hollow site of three metal atoms, and at that place, the N−N bond dissociates. As the number of ligand S atoms increases, the reactivity of Nb3Sn decreases because of the hindering effect of S atoms, while W3S and W3S2 have the highest reactivity among four W3Sn clusters. The Mayer bond order, bond length, vibrational frequency, and electronic charges of the adsorbed N2 are analyzed along the reaction pathways to show the activation process of the N−N bond in reactions. The charge transfer from the clusters to the N2 antibonding orbitals plays an essential role in N−N bond activation, which is more significant in Nb3Sn than in W3Sn, leading to the higher reactivity of Nb3Sn. The reaction mechanisms found in this work may provide important theoretical guidance for the further rational design of related catalytic systems for nitrogen reduction reactions (NRR). 相似文献
3.
A detailed study of the geometry, aromatic character, electronic and magnetic properties for a series of positively charged N-doped polycyclic aromatic hydrocarbons (PAHs) was performed. Magnetic properties of the examined molecules were analyzed by means of the magnetically induced current density calculated using the diamagnetic-zero version of the continuous transformation of origin of current density (CTOCD-DZ) method. The comparative study of the local aromaticity of the studied molecules was performed using several different indices: energy effect (ef), harmonic oscillator model of aromaticity (HOMA) index, six centre delocalization index (SCI) and nucleus independent chemical shifts (NICS). The presence of N-atoms in the inner rings was found to cause a planarity distortion in the studied N-doped systems. The geometric changes and charged nature of the studied N-doped systems do not significantly influence the current density and the local aromaticity distribution in comparison with the corresponding parent benzenoid hydrocarbons. The present study demonstrates how quantum chemical calculations can be used for rational design of novel PAHs and for fine tuning of their properties. 相似文献
4.
Dehydrogenation of an organic compound is the first and the most fundamental elementary reaction in many organic reactions. In ethanol oxidation reaction (EOR) to form CO2, there are a total of 46 pathways in C2HxO (x=1–6) species leading to the removal of all six hydrogen atoms in five C−H bonds and one O−H bond. To investigate the degree of dehydrogenation in EOR under operando conditions, we performed density function theory (DFT) calculations to study 28 dehydrogenation steps of C2HxO on Ir(100). An activation energy surface was then constructed and compared with that of the C−C bond cleavages to understand the importance of the degree of dehydrogenation in EOR. The results show that there are likely 28 dehydrogenations in EOR under fuel cell temperatures and the last two hydrogens in C2H2O are less likely cleaved. On the other hand, deep dehydrogenation including 45 dehydrogenations can occur under ethanol steam reforming conditions. 相似文献
5.
《Arabian Journal of Chemistry》2022,15(4):103687
We extracted one new C-methyl flavonoid, farrerol 7-O-β-d-(6-O-galloyl)glucopyranoside (1), along with 11 known flavonoids, from the Cleistocalyx (C.) conspersipunctatus leaves. Elucidation of these flavonoid structures was accomplished through spectroscopic investigation and electronic circular dichroism (ECD) computation. Compared to corosolic acid (IC50: 15.5 ± 0.9 μM), an established inhibitor, the compound 1 (IC50: 6.9 ± 1.2 μM) was found more active in suppressing α-glucosidase. These findings imply the potential of compound 1 as a valid α-glucosidase inhibitor, which also offer evidence for future animal experiments and clinical trials. Besides, molecular docking was employed to explore the probable mechanism for α-glucosidase–compound 1 interaction. The biosynthetic pathway of these flavonoids in C. conspersipunctatus were proposed. 相似文献
6.
针对属性权重未知,且属性值为毕达哥拉斯犹豫模糊数(PHFN)的风险型多属性决策问题,考虑到决策者的有限理性行为,提出基于累积前景理论(CPT)和多准则妥协优化解(VIKOR)的决策方法。首先,定义PHFN的分散率,并构建优化模型确定属性权重。其次,将CPT融入PHFN环境,定义PHFN的价值函数,并结合决策权重函数计算方案在各属性下的综合前景值。进一步,构建综合前景值矩阵,在此基础上运用VIKOR法确定方案排序。最后,通过风险投资项目选择的应用案例说明所提方法是可行、有效的。 相似文献
7.
8.
Having shown promising performance with high flexibility and efficiency in vehicular edge computing (VEC) network, the parked vehicles (PVs) received an increasing number of attentions in recent years. However, PVs’ residual battery power restricts their running time. In addition, there is still no alternate resource pool for the PVs to cope with the emergencies in the previous VEC framework. To alleviate these problems, we model a cloud-assisted parked vehicular edge computing (PVEC) framework, in which the PVs are classified based on their residual battery power. PVs corporate with the cloud servers (CSs) for the computational resources provision. In addition, we formulate the utilities of the service provider (SP) and PVs and design a contract-based resource allocation problem for the maximization of the SP’s utility. Considering that it is intractable to solve the optimization problem directly, the primal problem is simplified and decoupled into two sub-problems. To design the optimal contracts, we solve the sub-problems by Lagrangian multiplier method and dual function. Simulation results prove that the utilities of PVs can reach to the maximum when they choose the contract corresponding to their types. In addition, the simulation results illustrate the superiority of proposed scheme over previous schemes in improving the utilities of the SP and social welfare. 相似文献
9.
分子构象的聚类是搜索分子动力学模拟轨迹中代表构象的主要方法。 它是分析复杂构象改变或分子间相互作用机制的关键步骤. 作为一种基于密度的聚类算法,密度峰值搜索算法因其聚类的准确度而被应用于分子聚类过程中. 但随着模拟时长的增长,密度峰值搜索算法较低的计算效率限制了其应用的可能. 本文提出K-means密度峰值搜索算法的聚类算法,它是密度峰值搜索算法在计算效率方面的一个扩展版本,用于解决密度峰值搜索算法中巨大的资源消耗问题. 在K-means密度峰值搜索算法中,首先,通过高效的聚类算法(例如K-means)进行初始聚类,得到的聚类中心被定义为具有权重的典型点. 然后,对加权的典型点通过密度峰值搜索算法实现二次聚类,并细化点为核心点、边界点、加细光晕点. 在与密度峰值搜索算法具有相似的精度的同时,计算复杂度由O(n2)降至O(n). 通过二面角,二级结构,关联图描述的分子构象,将KFDP用于多个模拟轨迹的聚类过程中. 并通过与K-means聚类算法,DBSCAN聚类算法的比较结果,验证了K-means密度峰值搜索算法的优势. 相似文献
10.
In recent years, more and more attention had been paid to the combination of proteins and flavonoids, and several flavonoids had been reported to improve the physicochemical and emulsifying properties of proteins. This study investigated the effects of ultrasonic treatment (450 W for 10 min, 20 min, and 30 min) on the physicochemical properties, antioxidant activity, and emulsifying properties of soy protein isolate (SPI) -hawthorn flavonoids (HF) non-covalent complexes. The results showed that the addition of HF to SPI and 20 min of ultrasound could reduce α-helix and random coil, increase β-sheet and β-turn, and enhance fluorescence quenching. In addition, it decreased the particle size, zeta potential, surface hydrophobicity, and turbidity to 88.43 or 95.27 nm, −28.80 mV, 1250.42, and 0.23, respectively. The protein solubility, free sulfhydryl group, antioxidant activity, emulsifying activity index, and emulsifying stability index all increased to 73.93%, 15.07 μmol/g, 71.00 or 41.91%, 9.81 m2/g, and 67.71%, respectively. Moreover, high-density small and low-flocculation droplets were formed. Therefore, the combined ultrasound treatment and addition of HF to SPI is a more effective method for protein modification compared to ultrasound treatment alone. It provides a theoretical basis for protein processing and application in the future. 相似文献