Novel synthesis of sensor for selective detection of Fe+3 ions under various solvents

Naked-eye colored chemo dosimeter based on vanilline based conjugated sensor was synthesized and characterized. The main point of this paper is that the solvent also affects on selectivity of metals. Vanilline based conjugate sensor exhibited high selectivity and sensitivity for detection of Ferric ions (Fe⁺³) in all (both polar and nonpolar) solvents according to absorbance which can be observed by naked eye. The selectivity was more prominent in nonpolar or less polar solvent due to solubility factor of ions and sensor but not for polar. The detection of limit of the synthesized probes was shown up to 0.84 ppm. The dielectric constant of solvents affected on the complex formation of ligand with transition metal ions. A filter paper strip system was used for rapid monitoring of detection by color variation.     

A benchmark of optimally folded protein structures using integer programming and the 3D-HP-SC model

The Protein Structure Prediction (PSP) problem comprises, among other issues, forecasting the three-dimensional native structure of proteins using only their primary structure information. Most computational studies in this area use synthetic data instead of real biological data. However, the closer to the real-world, the more the impact of results and their applicability. This work presents 17 real protein sequences extracted from the Protein Data Bank for a benchmark to the PSP problem using the tri-dimensional Hydrophobic-Polar with Side-Chains model (3D-HP-SC). The native structure of these proteins was found by maximizing the number of hydrophobic contacts between the side-chains of amino acids. The problem was treated as an optimization problem and solved by means of an Integer Programming approach. Although the method optimally solves the problem, the processing time has an exponential trend. Therefore, due to computational limitations, the method is a proof-of-concept and it is not applicable to large sequences. For unknown sequences, an upper bound of the number of hydrophobic contacts (using this model) can be found, due to a linear relationship with the number of hydrophobic residues. The comparison between the predicted and the biological structures showed that the highest similarity between them was found with distance thresholds around 5.2–8.2 Å. Both the dataset and the programs developed will be freely available to foster further research in the area.     

Synthesis,spectroscopic studies,thermal analyses,biological activity of tridentate-coordinated transition-metal complexes [M(L)X2] and crystal structure of [ZnBr2(2,6-bis(tert-butylthiomethyl)pyridine)]

A new terdentate acyclic pincer ligand, 2,6-bis(tert-butylthiomethyl)pyridine (tbtmp), was synthesized and reacted with several complexes of iron, zinc, nickel, cobalt, and copper. The ligand and its coordination compounds were characterized using elemental analysis, infrared, ¹H- and ¹³C-NMR-spectroscopy, thermal analyses, plus—for the Zn complex—single-crystal X-ray diffractometry. The structure of [Zn(L)Br₂] was solved in the tetragonal crystal system, chiral space groups P4₁2₁2 and P4₃2₁2 (No. 92 and No. 96, a = 947.2(1) pm, c = 2265.2(5) pm), revealing five-fold coordination of the metal atoms. According to spectroscopy, all complexes share the same coordination environment around the metal atoms, consisting of two halide anions and a sulfur-methylene-pyridine-methylene-sulfur entity; tbtmp acts as a tridentate ligand with the pyridine N atom and both tert-butylthio S atoms coordinating to the metal ions (NS2). The analysis results indicate that the metal ions are coordinated as distorted pseudo-bipyramids, LMX₂, with the chelate ligand meridionally arranged. One of the complexes contains ethanol as an additional ligand, resulting in a pseudo-octahedral coordination sphere [Ni(L)Cl₂EtOH]. The latter was obtained in the form of green crystals, which turn into a red powder with loss of the ethanol molecule. Fe (III), Co(II), Ni(II) and Cu(II) metal complexes [M(L)Cl₂] were screened for their antibacterial activity against B. subtilis G(+) and Escherichia coli G(−) bacteria, and fungus (Candida albicans and Aspergillus flavus).     

The application of the Lattice Boltzmann method to the one-dimensional modeling of pulse waves in elastic vessels

The one-dimensional nonlinear equations for the blood flow motion in distensible vessels are considered using the kinetic approach. It is shown that the Lattice Boltzmann (LB) model for non-ideal gas is asymptotically equivalent to the blood flow equations for compliant vessels at the limit of low Knudsen numbers. The equations of state for non-ideal gas are transformed to the pressure-luminal area response. This property allows to model arbitrary pressure-luminal area relations. Several test problems are considered: the propagation of a sole nonlinear wave in an elastic vessel, the propagation of a pulse wave in a vessel with varying mechanical properties (artery stiffening) and in an artery bifurcation, in the last problem Resistor–Capacitor–Resistor (RCR) boundary conditions are considered. The comparison with the previous results shows a good precision.     

Synthesis of a graphene‐based nanocomposite for the dispersive solid‐phase extraction of vancomycin from biological samples

The approach of this work was to study the capability of graphene‐based materials in the field of biological sample preparation. A polypyrrole/graphene composite was synthesized and characterized. The potential of the nanocomposite was investigated as a sorbent in dispersive solid‐phase extraction followed by high‐performance liquid chromatography with UV detection for vancomycin as a model drug. The effect of different parameters influencing extraction efficiency such as sample pH and sample volume, ionic strength, extraction time, type, and volume of desorption solvent and desorption time were investigated. A comparison study was also conducted between polypyrrole/graphene and some different novel and classic sorbents. Under optimized conditions, the calibration curve for vancomycin showed linearity in the range of 0.05–10 μg/mL. In addition, limits of detection, and quantification were 0.003 and 0.01 μg/mL, respectively. The intraday and interday relative standard deviations at a concentration of 0.05 μg/mL (n = 3) were 1.6 and 2.1%, respectively. Furthermore, the proposed method was successfully applied for the determination of vancomycin in plasma and urine samples. The relative recoveries indicated the feasibility of graphene‐based sorbents in biological sample analysis.     

Direct electrochemical oxidation of a pesticide, 2,4-dichlorophenoxyacetic acid,at the surface of a graphite felt electrode: Biodegradability improvement

Pesticides’ biorecalcitrance can be related to the presence of a complex aromatic chains or of specific bonds, such as halogenated bonds, which are the most widespread. In order to treat this pollution at its source, namely in the case of highly concentrated solutions, selective processes, such as electrochemical processes, can appear especially relevant to avoid the possible generation of toxic degradation products and to improve biodegradability in view of a subsequent biological mineralization. 2,4-D was found to be electroactive in oxidation, but not in reduction, and the absence of hydroxyl radicals formation during the electrochemical step was demonstrated, showing that the pretreatment can be considered as a “direct” electrochemical process instead of an advanced electrochemical oxidation process. The presence of several degradation products in the oxidized effluent showed that the pretreatment was not as selective as expected. However, the relevance of the proposed combined process was confirmed since the overall mineralization yield was close to 93%.     

Computational analysis for the determination of deleterious nsSNPs in human MTHFD1 gene

Single nucleotide polymorphisms (SNPs) are the most common genetic polymorphisms and play a major role in many inherited diseases. Methylenetetrahydrofolate dehydrogenase 1 (MTHFD1) is one of the enzymes involved in folate metabolism. In the present study, the functional and structural consequences of nsSNPs of human MTHFD1 gene was analyzed using various computational tools like SIFT, PolyPhen2, PANTHER, PROVEAN, SNAP2, nsSNPAnalyzer, PhD-SNP, SNPs&GO, I-Mutant, MuPro, ConSurf, InterPro, NCBI Conserved Domain Search tool, ModPred, SPARKS-X, RAMPAGE, FT Site and PyMol. Out of 327 nsSNPs form human MTHFD1 gene, total 45 SNPs were predicted as functionally most significant SNPs, among which 17 were highly conserved and functional, 17 were highly conserved and structural residues. Among 45 most significant SNPs, 15 were predicted to be involved in post translational modifications. The p.Gly165Arg may interfere in homodimer interface formation. The p.Asn439Lys and p.Asp445Asn may interfere in binding interactions of MTHFD1 protein with cesium cation and potassium. The two SNPs (p.Asp562Gly and p.Gly637Cys) might interfere in interactions of MTHFD1 with ligand.     

Alloying-Triggered Phase Engineering of NiFe System via Laser-Assisted Al Incorporation for Full Water Splitting

It is challenging to design one non-noble material with balanced bifunctional performance for hydrogen evolution reaction (HER) and oxygen evolution reaction (OER) for commercial sustainability at a low cost since the different electrocatalytic mechanisms are not easily matchable for each other. Herein, a self-standing hybrid system Ni₁₈Fe₁₂Al₇₀, consisting of Ni₂Al₃ and Ni₃Fe phases, was constructed by laser-assisted aluminum (Al) incorporation towards full water splitting. It was found that the incorporation of Al could effectively tune the morphologies, compositions and phases. The results indicate that Ni₁₈Fe₁₂Al₇₀ delivers an extremely low overpotential to trigger both HER (η₁₀₀=188 mV) and OER (η₁₀₀=345 mV) processes and maintains a stable overpotential for 100 h, comparable to state-of-the-art electrocatalysts. The synergistic effect of Ni₂Al₃ and Ni₃Fe alloys on the HER process is confirmed based on theoretical calculation.     

Peripherally Heavy-Atom-Decorated Strategy Towards High-Performance Pure Green Electroluminescence with External Quantum Efficiency over 40 %

Heavy-atom integration into thermally activated delayed fluorescence (TADF) molecule could significantly promote the reverse intersystem crossing (RISC) process. However, simultaneously achieving high efficiency, small roll-off, narrowband emission and good operational lifetime remains a big challenge for the corresponding organic light-emitting diodes (OLEDs). Herein, we report a pure green multi-resonance TADF molecule BN-STO by introducing a peripheral heavy atom selenium onto the parent BN-Cz molecule. The organic light-emitting diode device based on BN-STO exhibited state-of-the-art performance with a maximum external quantum efficiency (EQE) of 40.1 %, power efficiency (PE) of 176.9 lm W⁻¹, well-suppressed efficiency roll-off and pure green gamut. This work reveals a feasible strategy to reach a balance between fast RISC process and narrow full width at half maximum (FWHM) of MR-TADF by heavy atom effect.