NIFTy 3 – Numerical Information Field Theory: A Python Framework for Multicomponent Signal Inference on HPC Clusters

NIFTy , “Numerical Information Field Theory,” is a software framework designed to ease the development and implementation of field inference algorithms. Field equations are formulated independently of the underlying spatial geometry allowing the user to focus on the algorithmic design. Under the hood, NIFTy ensures that the discretization of the implemented equations is consistent. This enables the user to prototype an algorithm rapidly in 1D and then apply it to high‐dimensional real‐world problems. This paper introduces NIFTy  3, a major upgrade to the original NIFTy  framework. NIFTy  3 allows the user to run inference algorithms on massively parallel high performance computing clusters without changing the implementation of the field equations. It supports n‐dimensional Cartesian spaces, spherical spaces, power spaces, and product spaces as well as transforms to their harmonic counterparts. Furthermore, NIFTy  3 is able to handle non‐scalar fields, such as vector or tensor fields. The functionality and performance of the software package is demonstrated with example code, which implements a mock inference inspired by a real‐world algorithm from the realm of information field theory. NIFTy  3 is open‐source software available under the GNU General Public License v3 (GPL‐3) at https://gitlab.mpcdf.mpg.de/ift/NIFTy/tree/NIFTy_3 .     

Multistrain edge‐based compartmental model on networks

Multistrain diseases, which are infected through individual contacts, pose severe public health threat nowadays. In this paper, we build competitive and mutative two‐strain edge‐based compartmental models using probability generation function (PGF) and pair approximation (PA). Both of them are ordinary differential equations. Their basic reproduction numbers and final size formulas are explicitly derived. We show that the formula gives a unique positive final epidemic size when the reproduction number is larger than unity. We further consider competitive and mutative multistrain diseases spreading models and compute their basic reproduction numbers. We perform numerical simulations that show some dynamical properties of the competitive and mutative two‐strain models.     

砂土串囊式充气锚杆承载力的研究

在砂土地层中,串囊式充气锚杆的研究还比较少,其承载特性及受力机理尚不明确。本文基于莫尔-库仑模型和Vesic圆孔扩张理论法,分别对圆柱体、球体、组合体、椭球体假设下的串囊式充气锚杆的扩大段进行计算分析。并将计算结果与试验得到的实测值进行对比。结果表明:四种形状假设中椭球体的形状假设理论值与实测值的误差最小,仅为8.35%。通过拟合试验数据,并引入与端阻力和侧摩阻力有关的两个系数对承载力公式进行修正,得到了抗拔承载力的经验公式。     

On the Motion of Substance in a Channel of a Network: Extended Model and New Classes of Probability Distributions

We discuss the motion of substance in a channel containing nodes of a network. Each node of the channel can exchange substance with: (i) neighboring nodes of the channel, (ii) network nodes which do not belong to the channel, and (iii) environment of the network. The new point in this study is that we assume possibility for exchange of substance among flows of substance between nodes of the channel and: (i) nodes that belong to the network but do not belong to the channel and (ii) environment of the network. This leads to an extension of the model of motion of substance and the extended model contains previous models as particular cases. We use a discrete-time model of motion of substance and consider a stationary regime of motion of substance in a channel containing a finite number of nodes. As results of the study, we obtain a class of probability distributions connected to the amount of substance in nodes of the channel. We prove that the obtained class of distributions contains all truncated discrete probability distributions of discrete random variable ω which can take values 0,1,⋯,N. Theory for the case of a channel containing infinite number of nodes is presented in Appendix A. The continuous version of the discussed discrete probability distributions is described in Appendix B. The discussed extended model and obtained results can be used for the study of phenomena that can be modeled by flows in networks: motion of resources, traffic flows, motion of migrants, etc.     

Quantum fractionalism: The Born rule as a consequence of the complex Pythagorean theorem

Everettian Quantum Mechanics, or the Many Worlds Interpretation, lacks an explanation for quantum probabilities. We show that the values given by the Born rule equal projection factors, describing the contraction of Lebesgue measures in orthogonal projections from the complex line of a quantum state to eigenspaces of an observable. Unit total probability corresponds to a complex Pythagorean theorem: the measure of a subset of the complex line is the sum of the measures of its projections on all eigenspaces.Postulating the existence of a continuum infinity of identical quantum universes, all with the same quasi-classical worlds, we show that projection factors give relative amounts of worlds. These appear as relative frequencies of results in quantum experiments, and play the role of probabilities in decisions and inference. This solves the probability problem of Everett's theory, allowing its preferred basis problem to be solved as well, and may help settle questions about the nature of probability.     

Stochastic delay foraging arena predator–prey system with Markov switching

Abstract

In this paper, we introduce white noise, telegraph noise and time delay to the two-dimensional foraging arena population system describing the prey and predator abundance. The aim is to find out how the interactions between white noise, telegraph noise and time delay affect the dynamics of the population system. Firstly, the existence of a global positive solution is verified. Then the long-time properties including the stochastically ultimate boundedness, extinction and some other asymptotic pathwise estimation of this population system are studied. Finally, the main results are illustrated by two examples.     

Moderate Deviation for the Rightmost Position in a Branching Brownian Motion

We study the moderate deviation probability of the position of the rightmost particle in a branching Brownian motion and obtain its moderate deviation function. Firstly, Chauvin and Rouault studied the large deviation probability for the rightmost position in a branching Brownian motion. Recently, Derrida and Shiconsidered lower deviation for the same model. By contrast, Our main result is more extensive.     

Tutorial review on validation of liquid chromatography–mass spectrometry methods: Part I

This is the part I of a tutorial review intending to give an overview of the state of the art of method validation in liquid chromatography mass spectrometry (LC–MS) and discuss specific issues that arise with MS (and MS/MS) detection in LC (as opposed to the “conventional” detectors). The Part I briefly introduces the principles of operation of LC–MS (emphasizing the aspects important from the validation point of view, in particular the ionization process and ionization suppression/enhancement); reviews the main validation guideline documents and discusses in detail the following performance parameters: selectivity/specificity/identity, ruggedness/robustness, limit of detection, limit of quantification, decision limit and detection capability. With every method performance characteristic its essence and terminology are addressed, the current status of treating it is reviewed and recommendations are given, how to determine it, specifically in the case of LC–MS methods.     

Two‐dimensional reactive scattering with transmitted quantum trajectories

A simple and easy‐to‐implement method is presented for the study of time‐dependent reaction dynamics by propagating an ensemble of transmitted quantum trajectories. During the trajectory evolution, reflected trajectories are gradually removed and all the remaining trajectories represent the transmitted subensemble. The removal process of reflected trajectories avoids numerical instabilities arising from node formation in the reactant region, and allows stable long‐time propagation of transmitted trajectories. This method is applied to a two‐dimensional model chemical reaction. Excellent computational results are obtained for the time‐dependent reaction probabilities evaluated by the time integration of the probability flux. © 2014 Wiley Periodicals, Inc.     

Systematic calculations of cluster radioactivity half-lives in trans-lead nuclei

In the present work, based on the Wentzel-Kramers-Brillouin (WKB) theory, considering the cluster preformation probability (\begin{document}$ P_{c} $\end{document}), we systematically investigate the cluster radioactivity half-lives of 22 trans-lead nuclei ranging from ²²¹Fr to ²⁴²Cm. When the mass number of the emitted cluster \begin{document}$ A_{c} $\end{document} \begin{document}$ < $\end{document} 28, \begin{document}$P_{c} $\end{document} is obtained by the exponential relationship of \begin{document}$ P_{c} $\end{document} to the α decay preformation probability (\begin{document}$ P_{\alpha} $\end{document}) proposed by R. Blendowskeis \begin{document}$ et $\end{document} \begin{document}$ al. $\end{document} [Phys. Rev. Lett. 61, 1930 (1988)], while \begin{document}$ P_{\alpha} $\end{document} is calculated through the cluster-formation model (CFM). When \begin{document}$ A_{c} $\end{document} \begin{document}$ \ge $\end{document} 28, \begin{document}$ P_{c} $\end{document} is calculated through the charge-number dependence of \begin{document}$ P_{c} $\end{document} on the decay products proposed by Ren \begin{document}$ et $\end{document} \begin{document}$ al. $\end{document} [Phys. Rev. C 70, 034304 (2004)]. The half-lives of cluster radioactivity have been calculated by the density-dependent cluster model [Phys. Rev. C 70, 034304 (2004)] and by the unified formula of half-lives for alpha decay and cluster radioactivity [Phys. Rev. C 78, 044310 (2008)]. For comparison, a universal decay law (UDL) proposed by Qi \begin{document}$ et $\end{document} \begin{document}$ al. $\end{document} [Phys. Rev. C 80, 044326 (2009)], a semi-empirical model for both α decay and cluster radioactivity proposed by Santhosh [J. Phys. G: Nucl. Part. Phys. 35, 085102 (2008)], and a unified formula of half-lives for alpha decay and cluster radioactivity [Phys. Rev. C 78, 044310 (2008)] are also used. The calculated results of our work, Ni's formula , and the UDL can well reproduce the experimental data and are better than those of Santhosh's model. In addition, we extend this model to predict the half-lives for 51 nuclei, whose cluster radioactivity is energetically allowed or observed but not yet quantified in NUBASE2020.