On-line cysteine modification for protein analysis: new probes for electrochemical tagging nanospray mass spectrometry

A series of electrogenerated selective electrophiles based on substituted benzoquinones has been characterized as tags for l-cysteine and cysteine residues in proteins. The electrophiles are generated electrochemically from the corresponding hydroquinones. It is shown from mass spectrometry analysis that the electrogenerated benzoquinone can tag the biomolecules. The rate constants pertaining to the addition of l-cysteine onto the electrogenerated benzoquinones have been determined using electrochemical techniques. The substitution patterns have been unraveled leading to the assessment of site-specific rate constants. It is shown that the rate constants are primarily dependent on the electronic nature of the substituents as expressed by the Hammett substitution constant. The apparent tagging yields observed for l-cysteine in nanospray mass spectrometry experiments do not correspond to the yields expected from the electrochemical study, as the ionisation efficiencies are highly dependent on the tag. Finally, the on-line tagging has been tested using β-lactoglobulin A and myoglobin. Based on these results, it is concluded that the tagging reaction is selective towards cysteine when it takes place in the nanospray interface. The results show that the methodology presented can be used for a rapid characterization and identification of reactive sites in biomolecules.     

关于Pn3的优美性

设G(V,E)是一个简单图,对自然数k,当V(G^k)=V(G,E(G^k)=E(G)∪{uv|d(u,v)=k},则称图G^k为k-次方图,本文证明了图P_n³的优美性。     

A Characterization of the Optimal p-sum Labellingsof Unit Interval Graphs

1.IntroductionGraphsconsideredinthispaperarefiniteandsimple.FOragraphG,V(G)andE(G)denoteitssetofvenicesandedges,respectively.AbijectionwillbecalledalabellingofG.Letpbeapositiverealnumber.ForagivenlabellingTofagraphG,definethegndiscrepencya.(G,ac)ofTasTheobjectiveoftheminimum-p--sumproblemistofindalabelling7ofagraphGsuchthatac(G,T)isassmallaspossible.ThelabellingTminimizinga.(G,7)iscalledanoptimalHsumlabellingofG.Theminimumvalueiscalledtheminimum-psumofG.ItisshowninI31thattheminimum-…     

A novel technique to specifically analyze the secretome of cells and tissues

The secretome of cells and tissues may reflect a broad variety of pathological conditions and thus represents a rich source of biomarkers. The identity of secreted proteins, usually isolated from cell supernatants or body fluids, is hardly accessible by direct proteome analysis, because these proteins are often masked by high amounts of proteins actually not secreted by the investigated cells. Here, we present a novel method for the specific detection of proteins secreted by human tissue specimen as well as cultured cells and chose liver as a model. The method is based on the metabolic labelling of proteins synthesized during a limited incubation period. Then, the cell supernatant is filtered, precipitated, and subjected to two-dimensional gel electrophoresis. Whereas fluorography detected a large number of proteins derived from residual plasma and dead cells, the autoradiographs selectively displayed genuinely secreted proteins. We demonstrate the feasibility of this approach by means of the secretomes of the hepatocellular carcinoma-derived cell line HepG2 and human liver slices. The selective identification of cell- and tissue-specific protein secretion profiles may help to identify novel sets of biomarkers for wide clinical applications.     

Practical synthesis of 1-deoxy-d-xylulose and 1-deoxy-d-xylulose 5-phosphate allowing deuterium labelling

An optimised gram scale synthesis allows the production of 1-deoxy-d-xylulose and 1-deoxy-d-xylulose 5-phosphate with possible deuterium labelling at C-5. Such substrates are required for investigations on the mevalonate-independent 2-C-methyl-d-erythritol 4-phosphate pathway for isoprenoid biosynthesis in bacteria and chloroplasts of phototrophic eukaryotes and for the biosynthesis of vitamins B₁ (thiamine diphosphate) and B₆ (pyridoxol phosphate) in bacteria.     

稳定氮氧自由基TMPO和TMPRO的合成与应用

本文评述了近年来4-氧-2,2,6,6-四甲基哌啶-1-氧自由基(TMPO)和2,2,5,5-四甲基吡咯啉-1-氧自由基(TMPRO)及其衍生物在合成和应用方面的进展,着重讨论了这些氮氧自由基的合成方法和作为自旋标记试剂的应用。     

Platination of [3-X-7,8-Ph2-7,8-nido-C2B9H8] (X=Et, F): Synthesis and characterisation of slipped and 1,2→1,7 isomerised products

The reaction of the labelled carborane ligand [3-Et-7,8-Ph₂-7,8-nido-C₂B₉H₈]²⁻ with a source of {Pt(PMe₂Ph)₂}²⁺ affords non-isomerised 1,2-Ph₂-3,3-(PMe₂Ph)₂-6-Et-3,1,2-closo-PtC₂B₉H₈ (1). The analogous reaction between [3-F-7,8-Ph₂-7,8-nido-C₂B₉H₈]²⁻ and {Pt(PMe₂Ph)₂}²⁺ yields 1,8-Ph₂-2,2-(PMe₂Ph)₂-4-F-2,1,8-closo-PtC₂B₉H₈ (3). Compound 1 has a heavily slipped structure (Δ 0.72 Å), which to some degree obviates the need for C atom isomerisation. However, that it is a kinetic product of the reaction is evident from the fact that it reverts to isomerised 1,8-Ph₂-2,2-(PMe₂Ph)₂-4-Et-2,1,8-closo-PtC₂B₉H₈ (2) slowly at room temperature but more rapidly with gentle warming. The heteroatom and labelled-B atom positions in the isomerised compounds 2 and 3 may be explained most simply by the rotation of a CB₂ face of an intermediate based on the structure of 1. Compounds 1–3 were characterised by a combination of spectroscopic and crystallographic techniques.     

Preliminary Study of a 1,5-Benzodiazepine-Derivative Labelled with Indium-111 for CCK-2 Receptor Targeting

The cholecystokinin-2 receptor (CCK-2R) is overexpressed in several human cancers but displays limited expression in normal tissues. For this reason, it is a suitable target for developing specific radiotracers. In this study, a nastorazepide-based ligand functionalized with a 1,4,7,10-tetraazacyclododecane-1,4,7,10-tetraacetic acid (DOTA) chelator (IP-001) was synthesized and labelled with indium-111. The radiolabeling process yielded >95% with a molar activity of 10 MBq/nmol and a radiochemical purity of >98%. Stability studies have shown a remarkable resistance to degradation (>93%) within 120 h of incubation in human blood. The in vitro uptake of [¹¹¹In]In-IP-001 was assessed for up to 24 h on a high CCK-2R-expressing tumor cell line (A549) showing maximal accumulation after 4 h of incubation. Biodistribution and single photon emission tomography (SPECT)/CT imaging were evaluated on BALB/c nude mice bearing A549 xenograft tumors. Implanted tumors could be clearly visualized after only 4 h post injection (2.36 ± 0.26% ID/cc), although a high amount of radiotracer was also found in the liver, kidneys, and spleen (8.25 ± 2.21%, 6.99 ± 0.97%, and 3.88 ± 0.36% ID/cc, respectively). Clearance was slow by both hepatobiliary and renal excretion. Tumor retention persisted for up to 24 h, with the tumor to organs ratio increasing over-time and ending with a tumor uptake (1.52 ± 0.71% ID/cc) comparable to liver and kidneys.     

Soluble Congeners of Prior Insoluble Shape-Persistent Imine Cages

One of the most applied reaction types to synthesize shape-persistent organic cage compounds is the imine condensation reaction and it is assumed that the formed cages are thermodynamically controlled products due to the reversibility of the imine condensation. However, most of the synthesized imine cages reported are formed as precipitate from the reaction mixture and therefore rather may be kinetically controlled products. There are even examples in literature, where resulting cages are not soluble at all in common organic solvents to characterize or study their formation by NMR spectroscopy in solution. Here, a triptycene triamine containing three solubilizing n-hexyloxy chains has been used to synthesize soluble congeners of prior insoluble cages. This allowed us to study the formation as well as the reversibility of cage formation in solution by investigating exchange of building blocks between the cages and deuterated derivatives thereof.     

An Unexpected Fluctuating Reactivity for Odd and Even Carbon Numbers in the TiO2‐Based Photocatalytic Decarboxylation of C2‐C6 Dicarboxylic Acids

The degradation behaviours of five straight‐chain dicarboxylic acids (from ethanedioic acid to hexanedioic acid) were compared in aqueous TiO₂‐based photocatalysis. When all other conditions were identical, the degradation rates were found to fluctuate regularly with the parity of the number of carbon atoms. Dicarboxylic acids with an even number of carbon atoms (e‐DAs) always degraded more slowly than those acids with an odd number of carbon atoms (o‐DAs). This unusual fluctuation in the reactivity for the degradation of dicarboxylic acids by TiO₂‐based photocatalysis is very closely related to the different pre‐coordination modes of the acids with the photocatalyst. Attenuated total reflection FTIR (ATR‐FTIR) of e‐DAs labelled with ¹³C showed that both carboxyl groups of the acid coordinate to TiO₂ through bidentate chelating forms. In contrast, only one carboxyl group of the o‐DAs coordinated to TiO₂ in a bidentate chelating manner, whereas the other formed a monodentate binding linkage. The bidentate chelating form with bilateral symmetric coordination did not favour degradation. Isotope‐labelling experiments were performed with ¹⁸O₂ to observe the different ways in which incorporated oxygen entered the initial decarboxylated products of e‐ and o‐DAs. For the degradation of butanedioic acid, (45.9±0.5) % of the oxygen in the formed propanedioic acid came from H₂O, whereas for pentanedioic acid, (97.4±0.2) % of the oxygen in the formed butanedioic acid came from H₂O. Our results demonstrate that in TiO₂‐based photocatalysis, the reactivity of active species, such as ^. OH/h_vb⁺, is far from non‐selective and that the attacks of these active species on organic substrates are significantly affected by the coordination patterns of the substrates on the TiO₂ surface.