Assessment of high-resolution methods for numerical simulations of compressible turbulence with shock waves

Flows in which shock waves and turbulence are present and interact dynamically occur in a wide range of applications, including inertial confinement fusion, supernovae explosion, and scramjet propulsion. Accurate simulations of such problems are challenging because of the contradictory requirements of numerical methods used to simulate turbulence, which must minimize any numerical dissipation that would otherwise overwhelm the small scales, and shock-capturing schemes, which introduce numerical dissipation to stabilize the solution. The objective of the present work is to evaluate the performance of several numerical methods capable of simultaneously handling turbulence and shock waves. A comprehensive range of high-resolution methods (WENO, hybrid WENO/central difference, artificial diffusivity, adaptive characteristic-based filter, and shock fitting) and suite of test cases (Taylor–Green vortex, Shu–Osher problem, shock-vorticity/entropy wave interaction, Noh problem, compressible isotropic turbulence) relevant to problems with shocks and turbulence are considered. The results indicate that the WENO methods provide sharp shock profiles, but overwhelm the physical dissipation. The hybrid method is minimally dissipative and leads to sharp shocks and well-resolved broadband turbulence, but relies on an appropriate shock sensor. Artificial diffusivity methods in which the artificial bulk viscosity is based on the magnitude of the strain-rate tensor resolve vortical structures well but damp dilatational modes in compressible turbulence; dilatation-based artificial bulk viscosity methods significantly improve this behavior. For well-defined shocks, the shock fitting approach yields good results.     

Quantification of 31 illicit and medicinal drugs and metabolites in whole blood by fully automated solid-phase extraction and ultra-performance liquid chromatography–tandem mass spectrometry

An efficient method for analyzing illegal and medicinal drugs in whole blood using fully automated sample preparation and short ultra-high-performance liquid chromatography–tandem mass spectrometry (MS/MS) run time is presented. A selection of 31 drugs, including amphetamines, cocaine, opioids, and benzodiazepines, was used. In order to increase the efficiency of routine analysis, a robotic system based on automated liquid handling and capable of handling all unit operation for sample preparation was built on a Freedom Evo 200 platform with several add-ons from Tecan and third-party vendors. Solid-phase extraction was performed using Strata X-C plates. Extraction time for 96 samples was less than 3 h. Chromatography was performed using an ACQUITY UPLC system (Waters Corporation, Milford, USA). Analytes were separated on a 100 mm?×?2.1 mm, 1.7 μm Acquity UPLC CSH C₁₈ column using a 6.5 min 0.1 % ammonia (25 %) in water/0.1 % ammonia (25 %) in methanol gradient and quantified by MS/MS (Waters Quattro Premier XE) in multiple-reaction monitoring mode. Full validation, including linearity, precision and trueness, matrix effect, ion suppression/enhancement of co-eluting analytes, recovery, and specificity, was performed. The method was employed successfully in the laboratory and used for routine analysis of forensic material. In combination with tetrahydrocannabinol analysis, the method covered 96 % of cases involving driving under the influence of drugs. The manual labor involved in preparing blood samples, solvents, etc., was reduced to a half an hour per batch. The automated sample preparation setup also minimized human exposure to hazardous materials, provided highly improved ergonomics, and eliminated manual pipetting.

Cyclic Ketones in Spiroannulation

Conversion of a cyclic carbonyl carbon into a quaternary carbon has been effected by a Wittig–Horner reaction with diethyl (N-benzyliden)aminomethylphosphonate and a subsequent alkylation with a protected vinyl ketone. The product was a substrate for spiroannulation after initial hydrolysis. The reaction sequence was carried out as a one-pot reaction.     

Ionization by pH and Anionic Surfactant Binding Gives the Same Thickening Effects of Crosslinked Polyacrylic Acid Derivatives

Physical properties of aqueous solutions of hydrophobically modified crosslinked polyacrylic acids change quite extensively as the polymer is charged up. A study is carried out concerning the similarities between two polymer ionization processes, that is, by pH increment and anionic surfactant addition. The two processes charge the polymer by distinctly different mechanisms. At sufficiently high pH the carboxylic groups of the polymer are virtually all ionized and the polymer is, therefore, fully charged. The effective repulsion among the charged groups due to the entropy of the counterions promotes an increased stiffness as well as an expansion of the polymer particles. We investigate here how the ionization and swelling will be if, instead of high pH, the polymer is at low pH conditions but associated to ionic surfactants. Surfactants associate to the polymer both in a noncooperative way by the binding of individual surfactant molecules and in a cooperative way as micelles since the polymer promotes surfactant self-assembly. This binding leads to a highly charged polymer-surfactant complex and leads to an osmotic swelling as well. The swelling and the gelation were monitored by rheology and dynamic light scattering, of polymer solutions by varying the pHs and adding ionic surfactants at low pH. The results show that ionization by surfactants and by pH lead to approximately the same gelation degree, as can be seen by similar viscosity values. Both processes result in dramatic viscosity increases, up to 8 orders of magnitude. More hydrophobic surfactants, with longer alkyl chain, are shown to be more efficient as enhancers of swelling and gelation. The network that is formed at high pH or at sufficiently high concentration of surfactant can be weakened or even disrupted if monovalent or divalent salts are added, demonstrating the role of counterion entropy.     

Determining PCB desorption behaviour on sediments with SFE and investigating the dependency of selective fractions on sediment characteristics

A method for studying PCB desorption behaviour from sediments using supercritical fluid extraction (SFE) and pressurized liquid extraction (PLE) is presented. Four sediments were investigated and extracted with supercritical carbon dioxide employing increasingly harsher extraction conditions ranging from 40°C and 12?MPa to 100°C and 36.5?MPa. To ensure quantitative extractions, the remaining SFE residues were also extracted with PLE. Resulting profiles identified at least three different PCB fractions within the four sediments. Furthermore, a distinct fraction was obtained with extraction for 2?h at 40°C and 36.5?MPa. This fraction has previously been found to correlate well with bioavailable fractions. The dependency of this fraction on sediment total organic carbon (TOC) was investigated, both for sediments examined in this study as well as for previously reported values using the same extraction conditions. It was found that TOC does not correlate to selective SFE, which indicates that the use of TOC to predict bioavailability is questionable.     

Synthesis of C 2 Symmetric Potential Inhibitors of HIV-1 Protease From D-Mannitol

ABSTRACT

D-Mannitol was used as precursor for the synthesis of acyclic C ₂ symmetric potential HIV-1 protease inhibitors. The 1- and 6-hydroxy groups of D-mannitol were substituted by -NHBoc, -NHValZ, -SAr, -SOAr and -SO₂Ar and the 2-and 5-hydroxy groups were benzylated. In some products one of the central hydroxyl groups was either inverted or deoxygenated. Despite a close structural similarity to previously published inhibitors none of the products showed significant inhibitory activity against HIV-1 protease.

     

Synthesis of Glycosylated Amino Acids for Use in Solid Phase Glycopeptide Synthesis,Part 2: N-(9-Fluorenylmethyloxycarbonyl)-3-0-[2,4,6-TRI-0-Acetyl-3-0-(2,3,4-TRI-0-Acetyl-α-D-Xylopyranosyl)-β-D-Glucopyranosyl]-L-Serine

Abstract

FMOC-serine phenacylester was glycosylated with a derivative of the disaccharide α-D-Xylp-(1→3)-β-D-Glcp, and the product was treated with zinc to remove the phenacyl group. The title derivative is useful for synthesis of blood clotting factor IX glycopeptide fragments by the solid-phase approach.     

Synthesis of 2,6-Dideoxy-6-Thio Derivatives of KDO

ABSTRACT

Ammonium 2,3,6-trideoxy-2,6-epithio-D-manno-2-octenoate (8), ammonium 2,3,6-trideoxy-2,6-epithio-D-glycero-D-talo-octanoate (10a), ammonium 2,3,6-trideoxy-2,6-epithio-D-glycero-D-galacto-octanoate (10b) and ammonium 2,3,6-trideoxy-2,6-epithio-oxa-D-glycero-D-galacto-octanoate (13) have been synthesised as potential inhibitors of the enzyme CMP-KDO synthetase. The key step in the synthesis of 8 was the elimination of water from methyl 3,6-dideoxy-4,5:7,8-di-O-isopropylidene-6-thio-D-manno-2-octulosonate (4) using chlorodiphenylphosphine, imidazole and bromine to give the unsaturated methyl 2,3,6-trideoxy-2,6-epithio-4,5:7,8-di-O-isopropylidene-D-manno-2-octenoate (5). For the synthesis of 10a and 10b, zinc reduction of methyl 3,6-dideoxy-4,5:7,8-di-O-isopropylidene-6-S-(4-methoxybenzyl)-6-thio-2-O-(trichloro-tert-butoxycarbonyl)-D-manno-2-octenoate (2) gave an epimeric mixture of an α-hydroxyester 6 which was ring closed by in situ activation of the hydroxyl group using triphenylphosphine and tri-iodoimidazole followed by cleavage of the p-methoxybenzyl group to give 7a and 7b, which then were deprotected to give 10a and 10b.     

UiO-66 and hcp UiO-66 Catalysts Synthesized from Ionic Liquids as Linker Precursors

Using ionic liquids (ILs) as linker precursors, the well-known metal-organic framework (MOF) UiO-66 (Universitetet i Oslo) and the recently reported MOF hcp UiO-66 (hexagonal closed packed) have been successfully synthesized and characterized. The advantage of the applied novel synthesis approach is an economically and environmentally benign work-up procedure, due to the better solubility of the IL. Additionally, the reactivity of the terephthalate anions is increased compared to terephthalic acid, resulting in faster MOF formation with an increased amount of defects in the MOF structure. In order to explore to the influence of defects on the catalytic performance, the cyclisation of citronellal to isopulegol was employed as test reaction. The activity of hcp UiO-66 and fcc UiO-66 (face centered cubic) is improved compared to other MOF or zeolite based catalysts, while the selectivity is similar.