Macromolecular crystallography research at Trombay

Neutron diffraction studies of hydrogen positions in small molecules of biological interest at Trombay have provided valuable information that has been used in protein and enzyme structure model-building and in developing hydrogen bond potential functions. The new R-5 reactor is expected to provide higher neutron fluxes and also make possible smallangle neutron scattering studies of large biomolecules and bio-aggregates. In the last few years infrastructure facilities have also been established for macromolecular x-ray crystallography research. Meanwhile, the refinement of carbonic hydrases’ and lysozyme structures have been carried out and interesting results obtained on protein dynamics and structure-function relationships. Some interesting presynaptic toxin phospholipases have also been taken up for study.     

Pion absorption by16O using realistic interactions—II: Free pion absorption followed by emission of proton

Matrix element of the Gallilean invariant nonrelativistic reduction of the pseudoscalar-pseudovector interaction has been calculated for free pion absorption by a single nucleon inside the nucleus of¹⁶O. The Hartree-Fock wavefunctions obtained with the unitary-model-operator approach starting with the hard-core nucleon-nucleon interaction have been used for the π-capturing nucleon in the initial state. The initial pion distortion in the presence of nuclear field of the absorbing nucleus prior to its absorption together with the Coulomb interaction with the finite nuclear size has been taken into account. The distortion of the emitted proton in the field of the residual nucleus has also been considered. The differential cross-sections have been obtained and calculated results are compared with the previous experimental and theoretical work.     

Effects of petroleum resins on asphaltene aggregation and water-in-oil emulsion formation

Asphaltenes from four crude oils were fractionated by precipitation in mixtures of heptane and toluene. Solubility profiles generated in the presence of resins (1:1 mass ratio) indicated the onset of asphaltene precipitation occurred at lower toluene volume fractions (0.1–0.2) than without resins. Small-angle neutron scattering (SANS) was performed on solutions of asphaltene fractions in mixtures of heptane and toluene with added resins to determine aggregate sizes. Water-in-oil emulsions of asphaltene–resin solutions were prepared and separated by a centrifuge method to determine the vol.% water resolved. In general, the addition of resins to asphaltenes reduced the aggregate size by disrupting the π–π and polar bonding interactions between asphaltene monomers. Interaction of resins with asphaltenic aggregates rendered the aggregates less interfacially active and thus reduced emulsion stability. The smallest aggregate sizes observed and the weakest emulsion stability at high resin to asphaltene (R/A) ratios presumably corresponded to asphaltenic monomers or small oligomers strongly interacting with resin molecules. It was often observed that, in the absence of resins, the more polar or higher molecular weight asphaltenes were insoluble in solutions of heptane and toluene. The addition of resins dissolved these insolubles and aggregate size by SANS increased until the solubility limit was reached. This corresponded approximately to the point of maximum emulsion stability. Asphaltene chemistry plays a vital role in dictating emulsion stability. The most polar species typically required significantly higher resin concentrations to disrupt asphaltene interactions and completely destabilize emulsions. Aggregation and film formation are likely driven by polar heteroatom interactions, such as hydrogen bonding, which allow asphaltenes to absorb, consolidate, and form cohesive films at the oil–water interface.     

The chemistry of the azanonaborane cluster RNH2---B8H11NHR

The preparation and properties of the R¹R²NH---B₈H₁₁NHR cluster are described. The cluster is stable to aqueous solutions and can be made water-soluble by the introduction of a few hydrophilic groups. This makes the cluster a good candidate as the boron moiety in compounds for boron neutron capture therapy. The chemistry of the cluster preparation, the stability of the cluster, and conditions for reactions of the organic moieties are reviewed. Pyridine derivatives of the cluster show electronic interaction between the cluster and the pyridine.     

Melt‐state polymer chain dimensions as a function of temperature

The unperturbed chain dimensions (〈R²〉_o/M) of cis/trans‐1,4‐polyisoprene, a near‐atactic poly(methyl methacrylate), and atactic polyolefins were measured as a function of temperature in the melt state via small‐angle neutron scattering (SANS). The polyolefinic materials were derived from polydienes or polystyrene via hydrogenation or deuteration and represent structures not encountered commercially. The parent polymers were prepared via lithium‐based anionic polymerizations in cyclohexane with, in some cases, a polymer microstructure modifier present. The polyolefins retained the near‐monodisperse molecular weight distributions exhibited by the precursor materials. The melt SANS‐based chain dimension data allowed the evaluation of the temperature coefficients [dln 〈R²〉_o/dT(κ)] for these polymers. The evaluated polymers obeyed the packing length (p)‐based expressions of the plateau modulus, G = kT/np³ (MPa), and the entanglement molecular weight, M_e = ρN_anp³ (g mol^?1), where n_t denotes the number (～21) of entanglement strands in a cube with the dimensions of the reptation tube diameter (d_t) and ρ is the chain density. The product np³ is the displaced volume (V_e) of an entanglement that is also expressible as pd or kT/G. © 2002 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 40: 1768–1776, 2002     

Neutron Diffraction Analysis of H3Co2[C5H2(t-Bu)3]2, a Molecule with a Triply Hydrogen-Bridged Metal–Metal Bond: Some Comments on Structural Patterns in M(μ-H)nM Systems (n=1, 2, 3, 4)

The structure of H₃Co₂[C₅H₂(t-Bu)₃]₂ has been analyzed by low-temperature single-crystal neutron diffraction techniques, and shown to consist of two CoCp moieties with three hydride ligands bridging the central Co–Co bond. Despite a fairly extensive twinning problem, the structure could be solved and successfully refined to a final R factor of 9.2% for 2024 reflections. Average molecular parameters in the H₃Co₂ core of the molecule are as follows: Co–Co=2.275(21) Å, Co–H=1.637(16) Å, HH=2.050(20) Å, Co–H–Co=88.0(9)°, H–Co–H=77.0(7)°. Also included in this paper is a discussion on the molecular dimensions of symmetric hydride-bridged dinuclear systems (M(-H)_nM, n=1, 2, 3, 4) that have been studied to date by neutron diffraction.     

Synthesis and Structure of Ba[ZrN2] and Ba2[NbN3]

Ba₃N₂ reacts at 950°C under pure N₂ with Zr to yield dark red, air-sensitive Ba[ZrN₂]. This new compound crystallizes in the tetragonal space group P4/nmm with a = 416.10(2), c = 839.2(1) pm and Z = 2. The crystal structure was solved and refined using X-ray and neutron powder diffraction data. In the nitrido zirconate [ZrN₂]^2? the Zr atoms exhibit a square-pyramidal coordination by five N atoms at distances of 201(3) and 220.2(2) pm. The pyramids share all the edges in the basal plane to form layers parallel to (001) with their apices alternately pointing up and down. The Ba²⁺ cations are integrated into these layers at the levels of the pyramidal apices. The structure can be interpreted as a stuffed PbFCl type. Ba₂[NbN₃] is formed by the reaction of Ba₃N₂ and NbN or of Ba and Nb at 1 000°C under N₂. Isostructural to Ba₂[TaN₃] it crystallizes in the monoclinic space group C2/c with a = 613.2(3), b = 1 176.8(3), c = 1 322.9(4) pm, β = 91.65(2)°, Z = 8. The nitrido niobate anions form chains of corner sharing NbN₄ tetrahedra with distances Nb? N between 188(1) and 199.9(9) pm.     

Derivatives of the closo-dodecaborate anion and their application in medicine

The paper presents a comparative analysis of the possibilities and characteristic features of the application of various polyhedral boron compounds, viz., the closo-decaborate anion [B₁₀H₁₀]^2–, the closo-dodecaborate anion [B₁₂H₁₂]^2–, the carba-closo-dodecaborate anion [CB₁₁H₁₂]^–, carboranes C₂B₁₀H₁₂, and the bis(dicarbollide) complexes [M(C₂B₉H₁₁)₂]^– (M = Fe, Co, or Ni), in boron neutron capture therapy (BNCT) for cancer. The requirements on compounds used in BNCT are formulated and the advantages of the application of the closo-dodecaborate anion are considered. The data on the synthesis of various derivatives of the closo-dodecaborate anion, which either already found use in BNCT or are most promising in this field, are summarized. The possibilities of the application of agents derived from the closo-dodecaborate anion in medical diagnostics are discussed.     

Some aspects of quality assessment of the k0-based method of NAA

Neutron activation analysis is one of the analytical techniques often used for certification of reference materials. The k₀-based method of instrumental neutron activation analysis can also be applied in intercomparison runs in the certification process and therefore it is desirable to know its accuracy in advance. Possible systematic errors related to the application of nuclear data at given neutron flux rate parameters, that can affect the uncertainties of the results obtained by this specific method, are elucidated and error propagation factors calculated for a typical irradiation position in the TRIGA Mark II reactor of the Jozef Stefan Institute. It was found that these uncertainties are at the level of 1–2% on the average.     

Structure and Phase Transitions of SnP2O7

SnP₂O₇ is a member of the ZrP₂O₇ family of materials, several of which show unusual thermal expansion behavior over certain temperature ranges and which show a number of displacive phase transitions on cooling from high temperature. Here we describe the structural properties of SnP₂O₇ from 100 to 1243 K as determined by X-ray and neutron powder diffraction. These studies reveal that SnP₂O₇ shows two phase transitions in this temperature range. At room temperature the material has a pseudo-cubic 3×3×3× superstructure. Electron diffraction studies show that the symmetry of this structure is P2₁3 or lower. On warming to ∼560 K it undergoes a phase transition to a structure in which the subcell reflections show a triclinic distortion; above 830 K the subcell reflections show a rhombohedral distortion. Significant hysteresis in cell parameters is observed between heating and cooling. The structure of SnP₂O₇ is discussed with references to other members of the AM₂O₇ family of materials.