Infrared and Raman spectra, conformational stability, ab initio calculations of structure, and vibrational assignment of 2-hexyne

The infrared spectra (3500–50 cm⁻¹) of the gas and solid and the Raman spectra (3500–50 cm⁻¹) of the liquid and solid have been recorded for 2-hexyne, CH₃–CC–CH₂CH₂CH₃. Variable temperature studies of the infrared spectrum (3500–400 cm⁻¹) of 2-hexyne dissolved in liquid krypton have also been recorded. Utilizing four anti/gauche conformer pairs, the anti(trans) conformer is found to be the lower energy form with an enthalpy difference of 74±8 cm⁻¹ (0.88±0.10 kJ/mol) determined from krypton solutions over the temperature range −105 to −150 °C. At room temperature it is estimated that there is 42% of the anti conformer present. Equilibrium geometries and energies of the two conformers have been determined by ab initio (HF and MP2) and hybrid DFT (B3LYP) methods using a number of basis sets. Only the HF and DFT methods predict the anti conformer as the more stable form as found experimentally. A vibrational assignment is proposed based on the force constants, relative intensities, depolarization ratios from the ab initio and DFT calculations and on rotational band contours obtained using the calculated equilibrium geometries. From calculated energies it is shown that the CH₃ group exhibits almost completely free rotation which is in agreement with the observation of sub-band structure for the degenerate methyl vibrations from which values of the Coriolis coupling constants, ζ, have been determined. The results are compared to similar properties of some corresponding molecules.     

An ab initio potential energy surface for the υ4 vibrational mode of hydrogen peroxide

In this paper, the levels and the torsional microstates of hydrogen peroxide are determined from fully optimized ab initio calculations using a nuclear model in one dimension. Calculations have been performed at the MP2 level with the 6-311 G(2df,2pd), 6-31 1+G(2df,2pd), cc-pVTZ and AUG-cc-pVTZ basis sets including polarization orbitals and diffuse functions. The most stable conformation, calculated with the MP2/AUG-cc-pVTZ approach, is a trans–gauche conformer lying at 67.5° from the trans structure. By using the same level of calculations, the heights of the trans and cis barriers have been determined to be 386.5 and 2643.8 cm⁻¹ in a good agreement with the experimental data. The variational torsional levels split into four components by the tunnelling effect of the barriers. The splitting of the fundamental level caused by the trans barrier has been found to be 11.8683 cm⁻¹, whereas the splitting caused by the cis barrier is insignificant under n=2. Current ab initio energies confirm the experimental assignments and verify the separability of the torsion from the rest of the vibrations. However, the experimental relation of dependence on the torsion of the rotational constants cannot be reproduced in one-dimension and depends on several additional vibrational effects.     

Applicability of the H NMR chemical shifts computed by the ab initio/GIAO-HF methodology to the study of geometrical features of Zn-porphyrin dimers

Several porphyrin dimers have been newly designed and synthesized to construct assemblies with 1,4-diazabicyclo[2.2.2]octane (DABCO) as a bidentate binding ligand. Semi empirical (AM1) and ab initio calculations have been used to study the assemblies generated by the organization of dimers and DABCO, including the computation of ¹H NMR complexation-induced chemical shifts using the ab initio/GIAO methodology. The diagnostic capacity of the theoretical method has been applied to explain experimental results and geometrical features of the complexes.     

NMR chemical shifts in the low–pH form of a-chymotrypsin. A QM/MM and ONIOM–NMR study

 The relationship between hydrogen bonding and NMR chemical shifts in the catalytic triad of low-pH α-chymotrypsin is investigated by combined use of the effective fragment potential [(2001) J Phys Chem A 105:293] and ONIOM–NMR [(2000) Chem Phys Lett 317:589] methods. Our study shows that while the His57 N^δ1−H bond is stretched by a relatively modest amount (to about 1.060 ?) this lengthening, combined with the polarization due to the molecular environment, is sufficient to explain the experimentally observed chemical shifts of 18.2 ppm. Furthermore, the unusual down-field shift of H^ɛ1 (9.2 ppm) observed experimentally is reproduced and shown to be induced by interactions with the C=O group of Ser214 as previously postulated. The free-energy cost of moving H^δ1 from His57 to Asp102 is predicted to be 5.5 kcal/mol. Received: 26 September 2001 / Accepted: 6 September 2002 / Published online: 21 January 2003 Contribution to the Proceedings of the Symposium on Combined QM/MM Methods at the 222nd National Meeting of the American Chemical Society, 2001 Correspondence to: J. H. Jensen e-mail: jan-jensen@uiowa.edu Acknowledgements. This work was supported by a Research Innovation Award from the Research Corporation and a type G starter grant from the Petroleum Research Fund. The calculations were performed on IBM RS/6000 workstations obtained through a CRIF grant from the NSF (CHE-9974502) and on supercomputers at the National Center for Supercomputer Applications at Urbana-Champaign. The authors are indebted to Visvaldas Kairys for help with the CHARMM program, and to Daniel Quinn for many helpful discussions.     

Quantum chemistry study on B32 and B32H2–32

The structures of B32 and B₃₂H^2–₃₂ with I_h symmetry have been investigated by means of ab initio calculations at STO-3G level. The relationship between molecular orbitals of them has been analyzed and their bonding properties have been discussed. Then the possibility of their existence, as well as the similarity and difference between B₃₂ (B₃₂H^2–₃₂) and C₆₀ (C₆₀H₆₀) have been inferred.     

A Quantum Chemical Study of N14 Cluster

Ab initio molecular orbital theory and density functional theory have been employed to study N₁₄ cluster with low spin at the HF/6-31G*, B3LYP/6-31G*, B3PW91/6-31G*, BP86/6-31G*, and BHLYP/6-31G* levels of theory. Twelve isomers were studied, including one previously investigated cage molecule. The most stable isomer of N₁₄ is a C _2h -symmetric molecule that contains two separated five-membered nitrogen rings connected by a —N=N—N=N— bridge. The second, third, and fifth most stable isomers each have one five-membered nitrogen ring. The theoretical results suggest that the five-membered nitrogen ring gives rise to a particularly stable structural unit, and the more side chains that the five-membered nitrogen ring links with, the less stable the structure will become.     

The mixed valent tellurate SrTe3O8: Electronic lone pair effect of Te

A novel mixed valent tellurium oxide, SrTe₃O₈, has been synthesized and its crystal structure was determined ab initio from powder X-ray diffraction data. This oxide, which crystallizes in a tetragonal unit-cell, P4₂/m space group, with very close a and c cell parameters (6.8257(1) and 6.7603(1) Å, respectively), exhibits a very original structure built up of corner-sharing TeO₆ (Te⁶⁺) octahedra and Te₂O₈ (Te⁴⁺) twin-pyramidal units. The latter ones form [Te₃O₈]_∞ chains running along the [001] and the [110] directions. Besides the four sided tunnels where the Sr²⁺ cations are located, there are very large four sided tunnels running along the c-axis which are obstructed by the electronic lone pairs of the Te⁴⁺ cations.     

Vibrational spectrum of BiH3: Six-dimensional variational calculations on high-level ab initio potential energy surfaces

We report a theoretical study of the ground electronic state of BiH₃. The potential energy surface (PES) is obtained from coupled cluster CCSD(T) calculations with a large basis set (289 contracted Gaussian functions). The previously available quartic force field (P4) is extended by adding the dominant quintic and sextic stretching terms to yield improved potential functions in symmetry coordinates (P6) and Morse-type coordinates (M4). Second-order rovibrational perturbation calculations on the P4-PES and full variational calculations on the P6-PES and M4-PES yield almost identical vibrational term values which is rationalized by considering the local mode behavior of BiH₃ and the Morse-type character of the M4-PES. The remaining deviations between the computed and observed vibrational term values must thus be caused by imperfections in the CCSD(T) surface. A refinement of this ab initio surface by a restrained fit to experimental data allows an essentially perfect reproduction of the observed vibrational term values. Variational calculations on this refined surface provide predictions for several overtone and combination bands that have not yet been observed. Dedicated to Hermann Stoll on the occasion of his 60th birthday     

Cis- and trans-3-hexene: infrared spectrum in liquid argon solution, ab initio calculations of equilibrium geometry, normal coordinate analysis, and vibrational assignments

The infrared spectra of cis-3-hexene and trans-3-hexene dissolved in liquid argon have been obtained at temperatures from 93 to 120 K. The absorptions were observed with a low-temperature cell and a Fourier transform infrared spectrophotometer. Ab initio molecular orbital calculations were performed to obtain the equilibrium geometry, vibrational frequencies, force fields, and infrared intensities. The calculations were done at the Hartree-Fock level using 6-31G basis set. The Cartesian force fields from ab initio calculations have been converted to the force field in symmetry coordinates. The scale factors of ab initio calculated force fields were determined. Normal coordinate calculations were performed using a scaled quantum mechanical (SQM) force field. Vibrational normal modes calculated for the lowest energy rotamers of cis- and trans-3-hexene have been assigned to infrared absorption bands observed in liquid argon solution. The assignments were based on calculated frequencies and potential energy distributions. The equilibrium geometries of the two lowest energy rotamers (symmetry C₂ and C_s) of cis-3-hexene and of the three lowest energy rotamers (symmetry C_i, C₂, and C₁) of trans-3-hexene were calculated. Variable temperature studies of the infrared spectrum of cis- and trans-3-hexenes dissolved in liquid argon were done to obtain the ΔH of conversion between the rotamers C₂ and C_s of cis-3-hexene and between the rotamers C_i, C₂, and C₁ of trans-3-hexene.     

四唑及其衍生物的理论研究（6）

对7个肼基四唑衍生物进行了HF／6－31G水平的几何构型全优化及MP2／6－31G／／HF／6－31G水平的总能量计算．结果表明，四唑环基本上取平面构型，肼基不与环共面．键长与重叠布居之间不存在平行关系．环上N1和N4原子荷负电多、利于质子化．1H．肼基四唑的HOMO－LUMO能级差（△E）较2H式的大，中性分子的△E教相应的负离子的大．还计算研究了7个标题物的红外光谱并由此求得了它们的热力学性质．