An Algorithm Framework for Drug-Induced Liver Injury Prediction Based on Genetic Algorithm and Ensemble Learning

In the process of drug discovery, drug-induced liver injury (DILI) is still an active research field and is one of the most common and important issues in toxicity evaluation research. It directly leads to the high wear attrition of the drug. At present, there are a variety of computer algorithms based on molecular representations to predict DILI. It is found that a single molecular representation method is insufficient to complete the task of toxicity prediction, and multiple molecular fingerprint fusion methods have been used as model input. In order to solve the problem of high dimensional and unbalanced DILI prediction data, this paper integrates existing datasets and designs a new algorithm framework, Rotation-Ensemble-GA (R-E-GA). The main idea is to find a feature subset with better predictive performance after rotating the fusion vector of high-dimensional molecular representation in the feature space. Then, an Adaboost-type ensemble learning method is integrated into R-E-GA to improve the prediction accuracy. The experimental results show that the performance of R-E-GA is better than other state-of-art algorithms including ensemble learning-based and graph neural network-based methods. Through five-fold cross-validation, the R-E-GA obtains an ACC of 0.77, an F1 score of 0.769, and an AUC of 0.842.     

遗传算法优化变分模态分解提取舰船辐射噪声特征线谱方法

特征线谱提取是舰船目标识别的一个重要研究环节,常采用传统的DEMON谱分析方法,处理过程中,一般对舰船噪声时域信号未予抑噪,低信噪比情况下,传统DEMON谱分析性能差。对此,提出一种采用遗传算法优化变分模态分解方法,用于分解舰船噪声原时域信号,获得抑制噪声后的舰船噪声重构信号,进而有效提取了舰船目标噪声幅度调制特征线谱。该方法首先采用遗传算法优化变分模态分解的两个关键输入参数(分解所取模态个数和惩罚因子),对变分模态分解得到的各阶固有模态分量加以判别,去除噪声主导分量,保留信号主导分量,使重构舰船噪声信号显著抑制了干扰噪声,然后对降噪后的重构信号进行频谱分析,获得目标噪声调制特征线谱。理论分析、仿真和实验数据处理结果表明,相比传统DEMON谱分析法,基于遗传算法优化变分模态分解的舰船噪声特征线谱提取方法具有更好的噪声抑制能力,所获取的舰船噪声幅度调制特征线谱信噪比明显高于传统DEMON方法,具有一定优势,前景良好。     

A time integral formulation and algorithm for structural dynamics with nonlinear stiffness

A newly-developed numerical algorithm, which is called the new Generalized-α (G-α) method, is presented for solving structural dynamics problems with nonlinear stiffness. The traditional G-α method has undesired overshoot properties as for a class of α-method. In the present work, seven independent parameters are introduced into the single-step three-stage algorithmic formulations and the nonlinear internal force at every time interval is approximated by means of the generalized trapezoidal rule, and then the algorithm is implemented based on the finite difference theory. An analysis on the stability, accuracy, energy and overshoot properties of the proposed scheme is performed in the nonlinear regime. The values or the ranges of values of the seven independent parameters are determined in the analysis process. The computational results obtained by the new algorithm show that the displacement accuracy is of order two, and the acceleration can also be improved to a second order accuracy by a suitable choice of parameters. Obviously, the present algorithm is zero-stable, and the energy conservation or energy decay can be realized in the high-frequency range, which can be regarded as stable in an energy sense. The algorithmic overshoot can be completely avoided by using the new algorithm without any constraints with respect to the damping force and initial conditions.The English text was polished by Keren Wang.     

Application of scaled boundary finite element method in static and dynamic fracture problems

The scaled boundary finite element method (SBFEM) is a recently developed numerical method combining advantages of both finite element methods (FEM) and boundary element methods (BEM) and with its own special features as well. One of the most prominent advantages is its capability of calculating stress intensity factors (SIFs) directly from the stress solutions whose singularities at crack tips are analytically represented. This advantage is taken in this study to model static and dynamic fracture problems. For static problems, a remeshing algorithm as simple as used in the BEM is developed while retaining the generality and flexibility of the FEM. Fully-automatic modelling of the mixed-mode crack propagation is then realised by combining the remeshing algorithm with a propagation criterion. For dynamic fracture problems, a newly developed series-increasing solution to the SBFEM governing equations in the frequency domain is applied to calculate dynamic SIFs. Three plane problems are modelled. The numerical results show that the SBFEM can accurately predict static and dynamic SIFs, cracking paths and load-displacement curves, using only a fraction of degrees of freedom generally needed by the traditional finite element methods.The project supported by the National Natural Science Foundation of China (50579081) and the Australian Research Council (DP0452681)The English text was polished by Keren Wang.     

钝头机体用FADS-α的求解算法及精度研究

针对钝头机体用嵌入式大气数据传感(flush air data sensing,FADS)系统的4类攻角求解算法及算法的求解精度进行研究.针对典型的15°钝头体外形,在Mach数Ma=2.04,3.02,5.01,攻角α=-5°～30°,侧滑角β=0°的条件下,首先基于势流理论及修正的Newton流理论建立了钝头机体用...     

The Classification of Rice Blast Resistant Seed Based on Ranman Spectroscopy and SVM

Rice blast is a serious threat to rice yield. Breeding disease-resistant varieties is one of the most economical and effective ways to prevent damage from rice blast. The traditional identification of resistant rice seeds has some shortcoming, such as long possession time, high cost and complex operation. The purpose of this study was to develop an optimal prediction model for determining resistant rice seeds using Ranman spectroscopy. First, the support vector machine (SVM), BP neural network (BP) and probabilistic neural network (PNN) models were initially established on the original spectral data. Second, due to the recognition accuracy of the Raw-SVM model, the running time was fast. The support vector machine model was selected for optimization, and four improved support vector machine models (ABC-SVM (artificial bee colony algorithm, ABC), IABC-SVM (improving the artificial bee colony algorithm, IABC), GSA-SVM (gravity search algorithm, GSA) and GWO-SVM (gray wolf algorithm, GWO)) were used to identify resistant rice seeds. The difference in modeling accuracy and running time between the improved support vector machine model established in feature wavelengths and full wavelengths (200–3202 cm⁻¹) was compared. Finally, five spectral preproccessing algorithms, Savitzky–Golay 1-Der (SGD), Savitzky–Golay Smoothing (SGS), baseline (Base), multivariate scatter correction (MSC) and standard normal variable (SNV), were used to preprocess the original spectra. The random forest algorithm (RF) was used to extract the characteristic wavelengths. After different spectral preproccessing algorithms and the RF feature extraction, the improved support vector machine models were established. The results show that the recognition accuracy of the optimal IABC-SVM model based on the original data was 71%. Among the five spectral preproccessing algorithms, the SNV algorithm’s accuracy was the best. The accuracy of the test set in the IABC-SVM model was 100%, and the running time was 13 s. After SNV algorithms and the RF feature extraction, the classification accuracy of the IABC-SVM model did not decrease, and the running time was shortened to 9 s. This demonstrates the feasibility and effectiveness of IABC in SVM parameter optimization, with higher prediction accuracy and better stability. Therefore, the improved support vector machine model based on Ranman spectroscopy can be applied to the fast and non-destructive identification of resistant rice seeds.     

神经网络在棱镜摄谱仪定量分析光谱中的应用

给出了采用BP神经网络拟合标准光源在棱镜摄谱仪的谱平面位置和相应波长的非线性函数,省去了和标准铁谱比对测量未知谱线波长,简化了光谱的定量分析,提高了仪器的自动化和智能化水平.     

声光调制实验的一种CCD成像改进方法

提出了声光调制实验的一种CCD成像改进的实验方法,即声光调制的入射光和衍射光成像于CCD上,对光斑图像进行编程处理,计算机给出光斑的位置。给出了实验步骤、图像处理算法和实验结果。     

上海深紫外自由电子激光装置波荡器磁场调整

 在对上海深紫外项目的波荡器建造过程中,应用亥姆霍兹线圈系统测量了全部单磁块,并使用模拟退火法对磁块进行组合排序优化,使反映磁场的成本函数下降了3个数量级。对一段波荡器进行了多次测量、调整,使积分场、峰峰值误差、位相误差等各项指标达到设计要求。     

免疫算法在双闭环直流调速系统中的应用

文中对双闭环直流调速系统控制器的选择进行了分析,并借鉴免疫算法强大的寻优能力,提出了基于免疫算法的调速系统控制器参数整定方法.为了分析比较,实际应用中采用了三种控制器参数整定方法,比较结果说明,免疫算法在调速系统控制器参数整定中的应用是更加有效的.通过在单晶炉拉晶过程的应用,证明该方法可行性和正确性.