Flexible matching of test ligands to a 3D pharmacophore using a molecular superposition force field: Comparison of predicted and experimental conformations of inhibitors of three enzymes

Summary A computer procedure TFIT, which uses a molecular superposition force field to flexibly match test compounds to a 3D pharmacophore, was evaluated to find out whether it could reliably predict the bioactive conformations of flexible ligands. The program superposition force field optimizes the overlap of those atoms of the test ligand and template that are of similar chemical type, by applying an attractive force between atoms of the test ligand and template which are close together and of similar type (hydrogen bonding, charge, hydrophobicity). A procedure involving Monte Carlo torsion perturbations, followed by torsional energy minimization, is used to find conformations of the test ligand which cominimize the internal energy of the ligand and the superposition energy of ligand and template. The procedure was tested by applying it to a series of flexible ligands for which the bioactive conformation was known experimentally. The 15 molecules tested were inhibitors of thermolysin, HIV-1 protease or endothiapepsin for which X-ray structures of the bioactive conformation were available. For each enzyme, one of the molecules served as a template and the others, after being conformationally randomized, were fitted. The fitted conformation was then compared to the known binding geometry. The matching procedure was successful in predicting the bioactive conformations of many of the structures tested. Significant deviation from experimental results was found only for parts of molecules where it was readily apparent that the template did not contain sufficient information to accurately determine the bioactive conformation.     

On guaranteed stability of uncertain linear systems via linear control

This paper addresses the problem of stabilizing an uncertain linear system. The uncertaintyq(·) which enters the dynamics is nonstistical in nature. That is, noa priori statistics forq(·) are assumed; only boundsQ on the admissible variations ofq(·) are taken as given. The results given here applied to so-called matched systems differ from previous results in two ways. Firstly, the stabilizing control in this paper is linear; for this same class of problems, many of the existing results would require a nonlinear control. Furthermore, those results which do in fact yield linear controls are only valid when a certain matrix (q) (formed using the given data) is negative definite for allq Q. In contrast, the theory given here only requires compactness of the bounding setQ. Secondly, we show that the so-called matching conditions (used in earlier work) can be generalized so as to encompass a larger class of dynamical systems.This research was supported by the US Department of Energy under Contract No. ET-78-S-01-3390.     

Conjugate-gradient method for computing the Moore-Penrose inverse and rank of a matrix

A conjugate-gradient method is developed for computing the Moore-Penrose generalized inverseA of a matrix and the associated projectors, by using the least-square characteristics of both the method and the inverseA . Two dual algorithms are introduced for computing the least-square and the minimum-norm generalized inverses, as well asA . It is shown that (i) these algorithms converge for any starting approximation; (ii) if they are started from the zero matrix, they converge toA ; and (iii) the trace of a sequence of approximations multiplied byA is a monotone increasing function converging to the rank ofA. A practical way of compensating the self-correcting feature in the computation ofA is devised by using the duality of the algorithms. Comparison with Ben-Israel's method is made through numerical examples. The conjugate-gradient method has an advantage over Ben-Israel's method.After having completed the present paper, the author received from Professor M. R. Hestenes his paper entitledPseudo Inverses and Conjugate Gradients. This paper treated the same subject and appeared in Communications of the ACM, Vol. 18, pp. 40–43, 1975.     

胆汁酸的薄层层析——数理统计法用于层析溶剂系统的选择

本文选择氯仿、乙醇、乙酸乙酯、醋酸和水等五种溶剂作为胆汁酸薄层层析的展开剂,采用正交设计法[L_(16)(4~5)]安排实验,对胆固醇、胆酸、脱氧胆酸、甘氨胆酸、甘氨脱氧胆酸、牛磺胆酸、牛磺脱氧胆酸和卵磷脂等八种化合物的R_f值及层析谱斑点的集中情况,用直观分析和方差分析法处理,得到了单向一次薄层层析全部分离胆汁的溶剂系统,较文献报道方法为佳。     

茉莉醛相转移催化合成法的改良

茉莉醛又称2-戊基肉桂醛,具有优雅的茉莉花香,是一种深受调香师喜爱的合成香料。目前已广泛应用于各种日用化学品中。     

多对一双方匹配市场中的最优化

在双方市场中定义的博弈概念，可以使市场同方参与者的收益同时达到最大．这种最优化存在的理论依据是选择匹配的稳定性．用博弈论的分析与证明方法研宄多对一双方匹配市场中的最优化．在替代偏好和LAD（Law of Aggregate Demend）偏好下，证明由企业作选择的选择函数一定是个稳定匹配，由工人做选择的选择函数也是一个稳定匹配．     

Difluorocarbene-Induced Ring-Opening Difluoromethylation-Halogenation of Cyclic (Thio)Ethers with TMSCF2X (X=Br,Cl)**

The ring-opening difluoromethylation-halogenation of cyclic (thio)ethers is reported through a simple strategy relying on carbon-chalcogen bond activation with difluorocarbene. The reaction proceeds through in situ protonation of the previously little-known difluoromethylene oxonium or sulfonium ylide intermediate followed by ring-opening with halide ion to afford halogenated acyclic difluoromethyl (thio)ethers that can then be employed for further elaboration. TMSCF₂X (X=Br, Cl) are unique reagents to achieve this synthetic purpose, which serve as both the difluorocarbene source and the halide ion source.     

Erdős matching conjecture for almost perfect matchings

In 1965 Erd?s asked, what is the largest size of a family of k-element subsets of an n-element set that does not contain a matching of size $s+1$? In this note, we improve upon a recent result of Frankl and resolve this problem for $s>101k^3$ and $(s+1)k?n<(s+1)(k+\frac{1}{100k})$.     

运用CAFP教学提升学生化学意志素质的教学案例

鉴于当前学生化学意志素质缺乏的问题，探讨以认知、情绪唤醒、情感、意志为主控目标，在预习、尝试学习、交错搭配合作学习中，开展CAFP教学研究，以促成情意因素对认知的调动、动力、强化等功能。     

用于考察外源添加剂对卷烟常规烟气指标影响的样品制备因子筛选

为筛选用于考察外源添加剂对卷烟常规烟气指标影响的样品制备关键控制因子,采用L_8(2~7)正交试验设计进行香兰素及乙基麦芽酚的添加实验.卷烟常规烟气指标变化数值通过极差分析、方差分析,结果显示:参比卷烟种类是影响卷烟烟气总粒相物、焦油、水分的高度显著因子,就试验采用的1R5F和3R4F参比卷烟而言,添加剂在高焦油3R4F卷烟中对常规烟气指标的影响比其在低焦油1R5F卷烟中的影响大;添加剂种类与浓度的交互作用不仅对卷烟烟气总粒相物有高度显著影响,而且对总粒相物中的水分也有显著影响;因此,规范样品制备,可减少误差、保证后续外源添加剂加入对卷烟常规烟气指标影响评价结果和推断的可靠性及科学性.