Matrix Lax Polynomials, Geometry of Prym Varieties and Systems of Hess–Appel’rot Type

We consider a four-dimensional generalization of Hess–Appel’rot system and costruct its Lax pair. Both classical and algebro-geometric integration procedure are proceeded. The algebro-geometric integration is based on deep facts from geometry of Prym varieties such as the Mumford relation and Mumford-Dalalyan theory. The integration is similar to the integration of Lagrange bitop which has recetly been performed by the authors.     

多级轴流压气机全工况特性计算

本文使用三维粘性流动计算软件Fine／Numeca,对某十五级轴流压气机进行了内流流场和全工况特性的数值计算尝试。分析了该压气机在设计工况和非设计工况的性能,同时把整机计算结果和前七级叶片的计算结果进行了比较。计算结果表明,当计算的级数较少时,目前的软件和硬件平台可以比较合理地预测压气机的全工况特性;而当计算的级数较多时,准确的数值模拟仍需要更为准确的多级模型和数值方法。     

Meshless simulation of equilibrium swelling/deswelling of pH‐sensitive hydrogels

Hydrogels have been widely used in microelectromechanical systems (MEMS) and Bio‐MEMS devices. In this article, the equilibrium swelling/deswelling of the pH‐stimulus cylindrical hydrogel in the microchannel is studied and simulated by the meshless method. The multi‐field coupling model, called multi‐effect‐coupling pH‐stimulus (MECpH) model, is presented and used to describe the chemical field, electric field, and the mechanical field involved in the problem. The partial differential equations (PDEs) describing these three fields are either nonlinear or coupled together. This multi‐field coupling and high nonlinear characteristics produce difficulties for the conventional numerical methods (e.g., the finite element method or the finite difference method), so an alternative—meshless method is developed to discretize the PDEs, and the efficient iteration technique is adopted to solve the nonlinear problem. The computational results for the swelling/deswelling diameter of the hydrogel under the different pH values are firstly compared with experimental results, and they have a good agreement. The influences of other parameters on the mechanical properties of the hydrogel are also investigated in detail. It is shown that the multi‐field coupling model and the developed meshless method are efficient, stable, and accurate for simulation of the properties of the stimuli‐sensitive hydrogel. © 2005 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 44: 326–337, 2006     

基于界面跟踪方法的汽蚀模型和算法的有效性验证

针对两相附着汽蚀流动机理,基于界面跟踪方法发展了新的汽蚀模型和算法。所发展的汽蚀模型和算法不仅考虑了液相／气相界面处的压力差,而且考虑了耦合Reynolds-Averaged Navier-Stokes方程求解技术得到的流场压力梯度信息来迭代计算附着汽蚀形状。采用具有试验数据的半球形头部圆柱体汽蚀绕流作为算例来验证所提出的汽蚀模型和算法的有效性。采用不同的网格数和松弛因子数值验证了发展的汽蚀模型和算法的有效性。三种汽蚀数下的数值计算结果得到的压力系数分布与试验数据完全吻合。结果表明所提出的汽蚀模型和算法能够准确模拟出汽蚀发生点和汽蚀长度。     

液固流化床内床层动态特性的CFD模拟

在对液固流化床内流动特性进行理论分析的基础上，采用多相流CFD方法模拟了二维矩形流化床内水和玻璃球体系的流体动力学特性。实验结果表明，流体速度突变后，液固流化床从一个平衡状态向另一个平衡状态过渡。当液体速度减小时，床层表面及分隔界面的变化与理论模型预测一致；由于重力不稳定性的影响，当液体速度增大时，床层表面稳定上升但与时间不呈线性关系，且分隔界面难以分辨。进而膨胀后停留时间的长短对收缩过程的影响也可以忽略。尽管床层收缩时间明显小于实际膨胀时间，但是与预报的理想膨胀时间比较接近。模拟结果与前人的实验研究和理论分析相吻合，表明多相流CFD模拟可以很好地预测液固流化床的床层动态行为。     

A method for selection and use of numerical integration points for molecules with cylindrical symmetry

Boys and Handy [1] have discussed the solution of the bivariational equations with restricted numerical integration. One of the weaknesses of the method was that in the numerical summations over points, some points arose with r _ij= 0 and non-zero weights. This makes the method quite impractical for the Schrodinger Hamiltonian (because of the singularity at r _ij= 0), and it cannot be advantageous for the transcorrelated Hamiltonian C^–1HC because there will be some discontinuous higher derivatives at r _ij=0. Here it is shown how the symmetry of cylindrically symmetric molecules can be used to eliminate such points, without losing any of the advantages of the overall method, such as the convergence of the eigensolutions. It is also shown how the primary numerical integration points (z _i, r_i) may be chosen in any calculation such that each is associated with an equal amount of one-electron density. The choice of the angular coordinates are governed by the removal of the r _ij=0 points and maintaining the natural orthogonality between orbitals of different symmetry types. The method has been programmed and found to be practical, although no new molecular calculations have yet been performed. It is to be hoped that these points will give a basis for new transcorrelated calculations on diatomic molecules.This paper was presented during the session on numerical integration methods for molecules of the 1970 Quantum Theory Conference in Nottingham. It has been revised in the light of the interesting discussion which followed.     

A Dynamic Analysis and Numerical Simulation of Explosive Development of an Extratropical Cyclone Over Land

The present paper has made a dynamic and diagnostic study of the process of explosive deepening of an extratropical cyclone over North China on April 25-26, 1983, in order to gain an insight into the physical mechanism of explosive development of cyclone over land. It turns out that this cyclone occurred in the strong baroclinic zone, and the vorticity and thermal advection triggered the initial development of the cyclone. Subsequently, as the rainfall increased, the effect of condensational heating became more and more important. During the time period of rapid intensification (from 1200GMT 25 to 0000GMT 26 April, 1983, the central surface pressure fell down from 998. 2 to 988. 3 hPa), the peak of diabatic heating profile continuously descended, leading to a rapid increase in heating amount in the lower troposphere. This condition is favorable to the explosive development of rotational circulation or vortex. The numerical simulations have further demonstrated the importance of the lowering of heating p     

Incorporating the effect of ionic strength in free energy calculations using explicit ions

The incorporation of explicit ions to mimic the effect of ionic strength or to neutralize the overall charge on a system in free energy calculations using molecular dynamics simulations is investigated. The difference in the free energy of hydration between two triosephosphate isomerase inhibitors calculated at five different ion concentrations is used as an example. We show that the free energy difference can be highly sensitive to the presence of explicit ions even in cases where the mutation itself does not involve a change in the overall charge. The effect is most significant if the molecule carries a net charge close to the site mutated. Furthermore, it is shown that the introduction of a small number of ions can lead to very severe sampling problems suggesting that in practical calculations convergence can best be achieved by incorporating either no counterions or by simulating at high ionic strength to ensure sufficient sampling of the ion distribution.     

predForm-Site: Formylation site prediction by incorporating multiple features and resolving data imbalance

Formylation is one of the newly discovered post-translational modifications in lysine residue which is responsible for different kinds of diseases. In this work, a novel predictor, named predForm-Site, has been developed to predict formylation sites with higher accuracy. We have integrated multiple sequence features for developing a more informative representation of formylation sites. Moreover, decision function of the underlying classifier have been optimized on skewed formylation dataset during prediction model training for prediction quality improvement. On the dataset used by LFPred and Formator predictor, predForm-Site achieved 99.5% sensitivity, 99.8% specificity and 99.8% overall accuracy with AUC of 0.999 in the jackknife test. In the independent test, it has also achieved more than 97% sensitivity and 99% specificity. Similarly, in benchmarking with recent method CKSAAP_FormSite, the proposed predictor significantly outperformed in all the measures, particularly sensitivity by around 20%, specificity by nearly 30% and overall accuracy by more than 22%. These experimental results show that the proposed predForm-Site can be used as a complementary tool for the fast exploration of formylation sites. For convenience of the scientific community, predForm-Site has been deployed as an online tool, accessible at http://103.99.176.239:8080/predForm-Site.     

Mass transport in gas channels of electrochemical cells with a solid-oxide electrolyte: Allowing for the electrode reaction rates in numerical calculations

The concentration fields, Nusselt number distributions along the electrode, and ratios of concentrations of electrochemically active components at the entrance into and exit out of an electrochemical cell are determined by numerical integration of the convective-diffusion equation for a broad range of rate constants of electrode reactions, Peclet numbers, and geometrical parameters of channels. Three regions of parameter values are revealed. At low reaction rates (K _l < 0.5), mass transfer is completely determined by electrode kinetics; at high rates (K _l > 20), it is completely determined by the diffusion in the gas phase; and in the intermediate region of values of K _l it is necessary to allow for both the diffusion processes and the electrode reactions.Translated from Elektrokhimiya, Vol. 41, No. 3, 2005, pp. 317–324.Original Russian Text Copyright © 2005 by Ezin, Somov.